Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30736
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               158   4e-39
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.077
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)                     31   0.95 
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.3  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   3.8  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   6.7  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 28   8.9  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  28   8.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  158 bits (384), Expect = 4e-39
 Identities = 72/84 (85%), Positives = 75/84 (89%)
 Frame = +1

Query: 256 PIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 435
           PIAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR V
Sbjct: 98  PIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHV 157

Query: 436 DIAIPCNTKSSHSIGLMWWLLARE 507
           D+AIPCN K  HSIGLM+WLLARE
Sbjct: 158 DVAIPCNNKGIHSIGLMFWLLARE 181



 Score =  134 bits (324), Expect = 7e-32
 Identities = 59/89 (66%), Positives = 76/89 (85%)
 Frame = +2

Query: 2   EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPA 181
           EDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+LAAR +V IENPA
Sbjct: 13  EDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPA 72

Query: 182 DVFVISSRPFGQRAVLKFAAHTGASLLRG 268
           DV VIS+RP+GQRA+LK+A+HTGA+ + G
Sbjct: 73  DVCVISARPYGQRAILKYASHTGATPIAG 101



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +3

Query: 546 WDVVVDLFFYRDPEESEKDEQQA 614
           W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 195 WEIMPDLYFYRDPEEAEKEEQAA 217


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +3

Query: 252  LAYCGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKI 431
            L  C   H+ C     SSCI   S+ DCI  C+ PS     F C+ +C         T++
Sbjct: 863  LRQCKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRV 915

Query: 432  CGHCYP 449
            C +C+P
Sbjct: 916  CENCHP 921


>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
          Length = 536

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -2

Query: 575 VEEQINHNIP--ALVTGKHNTKPQPSRANNHHI 483
           +E  ++  +P  A VTG H T+P+P++AN+ H+
Sbjct: 194 LENNLDQILPGSAKVTGHHVTEPRPAQANSDHV 226


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 337 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 432
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 318 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 443
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 313 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 462
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 560  NHNI-PALVTGK-HNTKPQPSRANNHHIKPI 474
            NH+I P    GK H+ +P  SR  NH I+PI
Sbjct: 1284 NHSIEPIASLGKNHSIEPIASRGKNHSIEPI 1314


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 167 IENPADVFVISSRPFGQRAVLKFAAHTGASLLRGVSHQVLLLTR 298
           +EN      ++ +PF +RA   F     +   R   HQV   TR
Sbjct: 62  LENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATR 105


>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 167 IENPADVFVISSRPFGQRAVLKFAAHTGASLLRGVSHQVLLLTR 298
           +EN      ++ +PF +RA   F     +   R   HQV   TR
Sbjct: 62  LENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATR 105


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 196 DDEHISGVLDGYDSTSSQNK 137
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSSSK 79


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 196 DDEHISGVLDGYDSTSSQNK 137
           ++EHI+ VLDGYD   S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,354,274
Number of Sequences: 59808
Number of extensions: 578625
Number of successful extensions: 1540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)