Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30736
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   125   3e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   121   4e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   121   4e-28
At2g22340.1 68415.m02651 hypothetical protein                          33   0.25 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.34 
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    32   0.45 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.8  
At2g43970.2 68415.m05468 La domain-containing protein contains P...    28   5.5  
At2g43970.1 68415.m05467 La domain-containing protein contains P...    28   5.5  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   5.5  
At5g45400.1 68418.m05579 replication protein, putative similar t...    27   9.6  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    27   9.6  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    27   9.6  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    27   9.6  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  125 bits (302), Expect = 3e-29
 Identities = 55/82 (67%), Positives = 64/82 (78%)
 Frame = +1

Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
           IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP+IA C+TDSP+RFVD
Sbjct: 103 IAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVD 162

Query: 439 IAIPCNTKSSHSIGLMWWLLAR 504
           I IP N K  HSIG ++WLLAR
Sbjct: 163 IGIPANNKGKHSIGCLFWLLAR 184



 Score =  120 bits (290), Expect = 7e-28
 Identities = 54/88 (61%), Positives = 68/88 (77%)
 Frame = +2

Query: 5   DVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPAD 184
           DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VAIENP D
Sbjct: 18  DVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQD 77

Query: 185 VFVISSRPFGQRAVLKFAAHTGASLLRG 268
           + V S+RP+GQRAVLKFA +TGA+ + G
Sbjct: 78  IIVQSARPYGQRAVLKFAQYTGANAIAG 105



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +3

Query: 540 QRWDVVVDLFFYRDPEES---EKDEQQAKEQXXXXXXXXXXXXXHEDWNETLEPVASW-A 707
           Q+WDV+VDLFFYR+PEE+   ++DE   + +              + W     P A+W  
Sbjct: 197 QKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGDQWTTAQIPDAAWPG 256

Query: 708 EDTAP 722
           E  AP
Sbjct: 257 EGQAP 261


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  121 bits (292), Expect = 4e-28
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +1

Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
           IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVD
Sbjct: 104 IAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVD 163

Query: 439 IAIPCNTKSSHSIGLMWWLLAR 504
           I IP N K  HSIG ++WLLAR
Sbjct: 164 IGIPANNKGKHSIGCLFWLLAR 185



 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/88 (59%), Positives = 69/88 (78%)
 Frame = +2

Query: 5   DVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPAD 184
           D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP D
Sbjct: 19  DIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKD 78

Query: 185 VFVISSRPFGQRAVLKFAAHTGASLLRG 268
           + V S+RP+GQRAVLKFA +TG + + G
Sbjct: 79  IIVQSARPYGQRAVLKFAQYTGVNAIAG 106



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +3

Query: 540 QRWDVVVDLFFYRDPEESEKDEQQAKE 620
           Q+WDV+VDLFFYR+PEE++++  +  E
Sbjct: 198 QKWDVMVDLFFYREPEEAKQEGDEEAE 224


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  121 bits (292), Expect = 4e-28
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +1

Query: 259 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 438
           IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP IA C+TDSP+ FVD
Sbjct: 104 IAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVD 163

Query: 439 IAIPCNTKSSHSIGLMWWLLAR 504
           I IP N K  HSIG ++WLLAR
Sbjct: 164 IGIPANNKGKHSIGCLFWLLAR 185



 Score =  120 bits (288), Expect = 1e-27
 Identities = 52/88 (59%), Positives = 69/88 (78%)
 Frame = +2

Query: 5   DVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPAD 184
           D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP D
Sbjct: 19  DIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKD 78

Query: 185 VFVISSRPFGQRAVLKFAAHTGASLLRG 268
           + V S+RP+GQRAVLKFA +TG + + G
Sbjct: 79  IIVQSARPYGQRAVLKFAQYTGVNAIAG 106


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 37  SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 156
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 319 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 468
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 598 RMNNKPRNRLWYQLNQK*LLLSMKTGMKHWSQWLHGLKIPPH 723
           +++++PR+R W QLN K L LS     K   + L+GLK   H
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGH 95


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 274 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 375
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -1

Query: 603 HPFHFLQGHGRRTNQPQHPSAGHGEAQYEASTFTCQQP 490
           H FH    H R  NQ   P   HGE Q        Q+P
Sbjct: 115 HRFHQHHHHNRHQNQQYVPVRNHGEYQQRGGVGGEQEP 152


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -1

Query: 603 HPFHFLQGHGRRTNQPQHPSAGHGEAQYEASTFTCQQP 490
           H FH    H R  NQ   P   HGE Q        Q+P
Sbjct: 115 HRFHQHHHHNRHQNQQYVPVRNHGEYQQRGGVGGEQEP 152


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 103 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 225
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At5g45400.1 68418.m05579 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain, PF04057:
           Replication factor-A protein 1, N-terminal domain
          Length = 853

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 576 GRRTNQPQHPSAGHGEAQYEASTFTCQQPPHQTNR 472
           G R +QP+ P+A    ++   S +  QQPP   NR
Sbjct: 253 GSRQDQPRAPTATTAYSRPVQSAYQPQQPPMYVNR 287


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +1

Query: 316 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 468
           +PR+  +  P+ DH+ IT AS  N PV     L  +   +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +1

Query: 7   CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 186
           CH   C   P  G++   P G    Q       CD +A   G TC     C  HR P  C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366

Query: 187 VRHLITALRSACCTEVCR 240
            R           T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 474 RVGRLGVAWDSNVHKS 427
           R GR+G  WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,425,999
Number of Sequences: 28952
Number of extensions: 386879
Number of successful extensions: 892
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)