Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30723
(716 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DA2A6C Cluster: PREDICTED: similar to WD-repeat ... 86 7e-16
UniRef50_Q9P2L0 Cluster: WD repeat-containing protein 35; n=33; ... 83 9e-15
UniRef50_UPI0000D5545C Cluster: PREDICTED: similar to WD repeat ... 82 2e-14
UniRef50_A7RQI9 Cluster: Predicted protein; n=2; Nematostella ve... 81 2e-14
UniRef50_Q9W097 Cluster: CG2069-PA; n=9; Coelomata|Rep: CG2069-P... 77 4e-13
UniRef50_Q57ZX9 Cluster: Putative uncharacterized protein; n=3; ... 72 2e-11
UniRef50_Q4QI50 Cluster: Putative uncharacterized protein; n=3; ... 66 6e-10
UniRef50_UPI00015B45C9 Cluster: PREDICTED: similar to rCG62265; ... 65 2e-09
UniRef50_Q22U89 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q4STU9 Cluster: Chromosome undetermined SCAF14112, whol... 57 5e-07
UniRef50_Q4RGL8 Cluster: Chromosome 10 SCAF15095, whole genome s... 57 5e-07
UniRef50_Q18859 Cluster: Putative uncharacterized protein C54G7.... 57 5e-07
UniRef50_A2DBT3 Cluster: WD repeat protein, putative; n=2; Trich... 56 9e-07
UniRef50_Q6BGG7 Cluster: WD-40 repeat protein, putative; n=2; Pa... 54 3e-06
UniRef50_Q5C5T9 Cluster: SJCHGC08862 protein; n=1; Schistosoma j... 36 1.00
UniRef50_A0CCW4 Cluster: Chromosome undetermined scaffold_169, w... 35 2.3
UniRef50_A0G0R8 Cluster: Diguanylate cyclase/phosphodiesterase w... 34 4.0
UniRef50_A0DXM8 Cluster: Chromosome undetermined scaffold_69, wh... 33 5.3
>UniRef50_UPI0000DA2A6C Cluster: PREDICTED: similar to WD-repeat
protein 35; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to WD-repeat protein 35 - Rattus norvegicus
Length = 911
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/70 (58%), Positives = 51/70 (72%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FVR DY GIKFV RL L S ++K+AE++AYF F+ AE++YL+ DRRDLAI LR +LG
Sbjct: 623 FVRCKDYQGIKFVKRLGNLQSESMKQAEVIAYFGRFEEAERMYLDMDRRDLAIGLRLKLG 682
Query: 244 HWFRWLNF*K 273
WFR L K
Sbjct: 683 DWFRVLQLLK 692
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSPRTAK 475
D++ DRQ W A++YY N E L +CY LED E L L S P K
Sbjct: 712 DYFADRQKWMNAVQYYVKGRNQERLAECYYMLEDYEGLENLANSLPENHK 761
Score = 38.7 bits (86), Expect = 0.14
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +1
Query: 520 INEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHLYNQ 687
+ + ++ I +++ AA + +++A+ EA K PLR+KKLY+L+ L Q
Sbjct: 829 LEKNKTLDAIELYRKASYFFDAAKLMYKIADEEAKKRTKPLRVKKLYVLSALLIEQ 884
>UniRef50_Q9P2L0 Cluster: WD repeat-containing protein 35; n=33;
Eumetazoa|Rep: WD repeat-containing protein 35 - Homo
sapiens (Human)
Length = 1181
Score = 82.6 bits (195), Expect = 9e-15
Identities = 40/70 (57%), Positives = 48/70 (68%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FVR DY GIKFV RL L S ++K+AE++ YF F+ AE+ YL DRRDLAI LR +LG
Sbjct: 719 FVRCKDYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEAERTYLEMDRRDLAIGLRLKLG 778
Query: 244 HWFRWLNF*K 273
WFR L K
Sbjct: 779 DWFRVLQLLK 788
Score = 52.8 bits (121), Expect = 8e-06
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSPRTAK 475
D++ DRQ W A++YY N E L +CY LED E L L IS P K
Sbjct: 808 DYFADRQKWLNAVQYYVQGRNQERLAECYYMLEDYEGLENLAISLPENHK 857
Score = 40.3 bits (90), Expect = 0.046
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 520 INEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHLYNQ 687
+ + ++ I +++ AA + F++A+ EA K + PLR+KKLY+L+ L Q
Sbjct: 925 LEKNKTLDAIELYRKANYFFDAAKLMFKIADEEAKKGSKPLRVKKLYVLSALLIEQ 980
>UniRef50_UPI0000D5545C Cluster: PREDICTED: similar to WD repeat
domain 35 isoform 2; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to WD repeat domain 35 isoform 2 -
Tribolium castaneum
Length = 989
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/80 (47%), Positives = 53/80 (66%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FVR DYA + FV +L ++S+A++KA I YFK+FD AEK Y+ DR DLA++LR+ LG
Sbjct: 593 FVRSRDYARVLFVKKLKDINSNAIRKARIATYFKNFDEAEKTYMEADRSDLALSLRQTLG 652
Query: 244 HWFRWLNF*KCRRTPPMHTL 303
WFR + K + P + L
Sbjct: 653 DWFRVIQILKNGTSAPDYLL 672
Score = 36.7 bits (81), Expect = 0.57
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESL 439
++++ NW A+EYY+++ N + +CY LED + L
Sbjct: 681 EYFVHFNNWVTAVEYYELAGNMAEMIECYYHLEDYKKL 718
>UniRef50_A7RQI9 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1173
Score = 81.4 bits (192), Expect = 2e-14
Identities = 38/64 (59%), Positives = 46/64 (71%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FVR DY GI+FV RL L + KKAE+ AYFK F+ AE++YL DRRDLA+ LR +LG
Sbjct: 650 FVRCQDYQGIRFVKRLIKLDNENKKKAEVAAYFKRFEEAERLYLEMDRRDLAVDLRLKLG 709
Query: 244 HWFR 255
WFR
Sbjct: 710 DWFR 713
Score = 46.0 bits (104), Expect = 0.001
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 311 LRQYW----DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSP 463
L Q W D+Y DRQ W A+ YY N E L +CY LED L + + P
Sbjct: 730 LEQAWNAIGDYYADRQKWQNAVTYYVQGRNQERLAECYYMLEDYAGLETMSSNLP 784
Score = 33.1 bits (72), Expect = 7.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 520 INEQPSIQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHLYNQ 687
+ + ++ I +++ I AA + F+LA +P+R KKLY+LA L +
Sbjct: 856 LEKNKTLNAIELYRKANHFIDAAKLLFKLAKETCDPRTNPMRGKKLYVLAALLVEE 911
>UniRef50_Q9W097 Cluster: CG2069-PA; n=9; Coelomata|Rep: CG2069-PA -
Drosophila melanogaster (Fruit fly)
Length = 1205
Score = 77.0 bits (181), Expect = 4e-13
Identities = 36/64 (56%), Positives = 45/64 (70%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FVR Y GIK V RL +HS L++AEI A++ +F+ AEK+YL+ DRRDLAI LR L
Sbjct: 732 FVRCAHYPGIKLVKRLRTIHSKELQRAEISAFYGEFEEAEKLYLDADRRDLAIELRMTLC 791
Query: 244 HWFR 255
WFR
Sbjct: 792 DWFR 795
Score = 39.5 bits (88), Expect = 0.081
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 559 KESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHLYNQNPGAAGCT 711
+ +GR + AA + Q+A E K A LRIKKLY+LA L ++ A T
Sbjct: 951 RNAGRHLDAARLLSQMAEREQEKRAPLLRIKKLYVLAALLAEEHLKAVATT 1001
>UniRef50_Q57ZX9 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 1260
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/64 (51%), Positives = 42/64 (65%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
F+R DY I+FV R+ L ++AEI Y+ FD AEKIY + DR+DLA+ LR RLG
Sbjct: 714 FIRCGDYPAIQFVKRIKTLDDPQKQRAEIHTYYHRFDQAEKIYKDIDRKDLALELRYRLG 773
Query: 244 HWFR 255
WFR
Sbjct: 774 DWFR 777
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKL 448
DFY DRQ W+ A +YY S L ED + L +L
Sbjct: 801 DFYADRQKWTKAAQYYSQSQQLHKLAHILFLQEDYDLLVQL 841
>UniRef50_Q4QI50 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1248
Score = 66.5 bits (155), Expect = 6e-10
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
F+ DY I+FV R+ +L + AE+ AY++ FD AE++Y + DR+DLA+ LR RLG
Sbjct: 698 FIHCKDYPAIQFVKRVRSLDDPKKQLAEVNAYYRRFDEAERLYKDVDRKDLALDLRYRLG 757
Query: 244 HWF 252
WF
Sbjct: 758 DWF 760
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKL 448
D Y RQ WS A +YY + L + +ED E L++L
Sbjct: 785 DHYASRQKWSKAAQYYTQCRHYRKLAHVFYIIEDYEMLTQL 825
>UniRef50_UPI00015B45C9 Cluster: PREDICTED: similar to rCG62265;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
rCG62265 - Nasonia vitripennis
Length = 1131
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/65 (47%), Positives = 43/65 (66%)
Frame = +1
Query: 67 VRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLGH 246
VR DY GI+FV RL + L++AE++ + +D AE+ YL DRRDLAIALR++L
Sbjct: 724 VRCADYLGIRFVKRLRGIQEPGLRRAEVLGFLGAYDEAEQAYLELDRRDLAIALRQKLAD 783
Query: 247 WFRWL 261
+ R L
Sbjct: 784 YPRAL 788
Score = 37.9 bits (84), Expect = 0.25
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +1
Query: 538 IQYIIQLKESGRTIQAANMAFQLANVEASKNASPLRIKKLYILAGHLYNQN 690
+Q I +++ ++AA + +LA +A + A PLR+KKLY+LA L ++
Sbjct: 934 LQAIELYRKADCPLEAAKLLLELAAEQARRRAPPLRLKKLYVLAALLVQEH 984
>UniRef50_Q22U89 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1206
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/62 (43%), Positives = 39/62 (62%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FV+ DYA +KF+ R+ L ++AEI YF + AE+IY +RRDL+I +R +LG
Sbjct: 706 FVQCKDYASLKFLQRVRELDDRERQRAEIQCYFNKVEEAEEIYNKIERRDLSIQMRMKLG 765
Query: 244 HW 249
W
Sbjct: 766 DW 767
>UniRef50_Q4STU9 Cluster: Chromosome undetermined SCAF14112, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF14112,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 348
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRR 210
FV DY GI+F+ RL+ L ++K+AE+ AYF F+ AE++YL+ DRR
Sbjct: 63 FVHCRDYPGIQFIKRLDKLKGESMKQAEVAAYFGSFEEAERMYLDMDRR 111
Score = 33.5 bits (73), Expect = 5.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 353 SGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSP 463
+ A++YY N E L +CY LED E L +L P
Sbjct: 212 ANAVQYYLKGRNQERLAECYYMLEDYEGLEQLTSELP 248
>UniRef50_Q4RGL8 Cluster: Chromosome 10 SCAF15095, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 10 SCAF15095, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1222
Score = 56.8 bits (131), Expect = 5e-07
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRR 210
FV DY GI+F+ RL+ L ++K+AE+ AYF F+ AE++YL+ DRR
Sbjct: 734 FVHCRDYPGIQFIKRLDKLKGESMKQAEVAAYFGSFEEAERMYLDMDRR 782
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSP 463
D++ DRQ W+ A++YY N E L +CY LED E L +L P
Sbjct: 848 DYFADRQKWANAVQYYLKGRNQERLAECYYMLEDYEGLEQLTSELP 893
>UniRef50_Q18859 Cluster: Putative uncharacterized protein C54G7.4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein C54G7.4 - Caenorhabditis elegans
Length = 1199
Score = 56.8 bits (131), Expect = 5e-07
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
FV+ DYAG++ V +L + S+ L+ AEI AY + A+ +L DRRDLA+ + K++G
Sbjct: 727 FVKLGDYAGVQLVKKLRNIQSNDLRNAEIYAYRDTLEEAKTAFLQADRRDLAVEMYKKVG 786
Query: 244 HW 249
+
Sbjct: 787 DY 788
>UniRef50_A2DBT3 Cluster: WD repeat protein, putative; n=2;
Trichomonas vaginalis G3|Rep: WD repeat protein,
putative - Trichomonas vaginalis G3
Length = 1109
Score = 56.0 bits (129), Expect = 9e-07
Identities = 22/60 (36%), Positives = 40/60 (66%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
++ +Y G++FV R+ + +++A++++Y FD AE IYL+ DR DLAI +R+ +G
Sbjct: 643 YLETTNYRGLQFVKRIRTVKDPNIQRAQVLSYLGRFDEAESIYLSMDRLDLAIEMRRSIG 702
>UniRef50_Q6BGG7 Cluster: WD-40 repeat protein, putative; n=2;
Paramecium tetraurelia|Rep: WD-40 repeat protein,
putative - Paramecium tetraurelia
Length = 1196
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 64 FVRRNDYAGIKFVSRLNALHSSALKKAEIMAYFKDFDAAEKIYLNEDRRDLAIALRKRLG 243
+++ DYAG++F+ R+ +KAE+ + K FD AEKI +R+DLA+ +R + G
Sbjct: 710 YLKLEDYAGLQFIKRILDYDEKEKQKAEVYVFLKRFDEAEKILREIERKDLAVQMRMKTG 769
Query: 244 HWFRWL 261
+ R L
Sbjct: 770 DYSRVL 775
Score = 36.3 bits (80), Expect = 0.76
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 326 DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKL 448
+FY D+ W A + +K+SNN E L + +ED ++L +L
Sbjct: 797 NFYCDQGEWEKAQQQFKLSNNVERLIETSFMIEDYQTLEEL 837
>UniRef50_Q5C5T9 Cluster: SJCHGC08862 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08862 protein - Schistosoma
japonicum (Blood fluke)
Length = 218
Score = 35.9 bits (79), Expect = 1.00
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 526 EQPSIQYIIQL-KESGRTIQAANMAF-QLANVEASKNASPLRIKKLYILAGHLYNQ 687
EQ I I+L K +GR + AA + + ++ N + N PL +KK+Y+L G L Q
Sbjct: 36 EQGRIVEAIELYKHAGRFLDAAELLYKEVQNTKRLSNNKPLYMKKIYVLIGLLVEQ 91
>UniRef50_A0CCW4 Cluster: Chromosome undetermined scaffold_169,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_169,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 442
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 275 VGEHHRCTH*-TSLRQYW-DFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKL 448
+G HRC +L+Q+ D+ + +Q+ A+ + L K + + + S S L
Sbjct: 138 IGSTHRCVEFLNALKQFIKDYKLSKQSNYFAMAFLDELKKIFNLMKNFRTVNEGMSTSYL 197
Query: 449 FISSP-RTAKDTKLKQNDAELW 511
FI +DTKL +N++++W
Sbjct: 198 FIRECLMILRDTKLDENESKIW 219
>UniRef50_A0G0R8 Cluster: Diguanylate cyclase/phosphodiesterase with
PAS/PAC sensor(S) precursor; n=1; Burkholderia phymatum
STM815|Rep: Diguanylate cyclase/phosphodiesterase with
PAS/PAC sensor(S) precursor - Burkholderia phymatum
STM815
Length = 918
Score = 33.9 bits (74), Expect = 4.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 252 SVVELLKMSANTTDAHIKQAYVNIGTSTLIDKIGAVLWNTIKCPITQKD*RNV 410
+V+ K+ N+T ++ A+ I + + I A LWN I C I+ D R+V
Sbjct: 370 AVIISRKIDGNSTITYVNAAFERITGRSATEAIDAELWNLIGCDISTPDARSV 422
>UniRef50_A0DXM8 Cluster: Chromosome undetermined scaffold_69, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_69,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 519
Score = 33.5 bits (73), Expect = 5.3
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 323 WDFYIDRQNWSGALEYYKMSNNTEGLKKCYMALEDNESLSKLFISSPRTAKDTKLKQNDA 502
W+F +++ + + ++N+ LK C M L+++ + S R +D +LK+ D
Sbjct: 388 WEFGSEKKRFKSKPSFASFTSNSSCLKGCTMTLKEDFQNIQQSQPSERVVEDDELKEKDT 447
Query: 503 EL 508
E+
Sbjct: 448 EV 449
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,474,051
Number of Sequences: 1657284
Number of extensions: 13614984
Number of successful extensions: 30268
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 29357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30260
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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