Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30706
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.7  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  

>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 153
           N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17  NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 222 LELRWYTEHGCAL 260
           L LRWYT H C L
Sbjct: 567 LYLRWYTHHPCIL 579


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 218 ADLLKKQSTNFLKA-LSSEFCPVFAAFITSVLTPDSLT 108
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,830
Number of Sequences: 5004
Number of extensions: 36213
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)