Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30010X
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.37 
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   1.1  
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188...    29   2.6  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   2.6  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   3.4  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   4.5  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   4.5  
08_02_1172 + 24898290-24899141,24900864-24901328                       28   6.0  
02_01_0775 + 5775949-5777385                                           28   6.0  
04_03_1022 - 21778315-21779007                                         27   7.9  
03_02_0662 - 10250235-10250433,10250692-10253105                       27   7.9  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 66  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 194
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 66  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 167
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>12_02_1152 +
           26515422-26515460,26516317-26516454,26518647-26518809,
           26519165-26519213,26519315-26519390,26520348-26520473
          Length = 196

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 243 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 73
           S +N+++ RCG    HC  L   +   L       +  H   + E G  GC  DQSG
Sbjct: 20  SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 66  VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 176
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 68  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 241
           +PP   PL+P +PSS+  H    LQ      +  L  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 242 LPN 250
           +PN
Sbjct: 239 MPN 241


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 220 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 74
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 298 VLEQSSAPSSSAIPGTPPSNSSCSHT 375
           +L +SSAP+   +P  PPS ++ S+T
Sbjct: 183 ILRRSSAPAEKLMPPPPPSTTTGSYT 208


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 68  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 244
           LPP  + L P            H  QYPP   ++   +H   Q  PS P R +L  L+L 
Sbjct: 40  LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99

Query: 245 P 247
           P
Sbjct: 100 P 100


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 153 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 37
           GG   +W  Q RV   G  GC     G       + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +2

Query: 32  CRAPHLIKTKCCLPPD*SPLQPGL--PSSATLHWCDHLQQYPPIH 160
           C + HL+      PP    + P L  PS A   W DH   Y P H
Sbjct: 29  CSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQWYDHPPNYHPPH 73


>03_02_0662 - 10250235-10250433,10250692-10253105
          Length = 870

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 237 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCK 136
           V ++ D     GP+ + L +DS++H  + G CC+
Sbjct: 814 VAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQ 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,799,900
Number of Sequences: 37544
Number of extensions: 324436
Number of successful extensions: 1306
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)