Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31053
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320 32 0.41
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 31 0.71
08_02_1583 + 28036125-28037030,28037411-28037656 31 0.94
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 31 0.94
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 29 3.8
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 29 3.8
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 29 3.8
12_02_0139 - 14277389-14279119 29 5.0
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 29 5.0
06_03_1150 + 28022633-28023374,28023501-28023565 29 5.0
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 5.0
12_02_0189 + 15165485-15168694 28 6.6
10_08_0757 + 20367348-20367560,20367657-20367904,20371406-203717... 28 6.6
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 28 6.6
03_01_0154 - 1223879-1224274,1224391-1224585 28 6.6
>01_02_0095 - 11076493-11077644,11077845-11077918,11078155-11078320
Length = 463
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +1
Query: 379 AGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCHFRHLPRCYKTTIIYTKDIDRLYL 558
AG L DE +LGA E+ + R +W+ +F H+ ++ TK + Y
Sbjct: 37 AGELGDEGELGARRARRGEEVQRRFRLLWKFRCVKWNFSHMEVQLMDWMVNTKGMSMTYA 96
Query: 559 RSAHVLHQIFRIH 597
R A L ++ ++
Sbjct: 97 RYALHLELLYSVY 109
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 362 WLKF*KLACYPMRLIWEHWPITPPNRPRNSFAKYGRRRGTCAI 490
W F +L CYP+ + WP PP+ R Y R A+
Sbjct: 133 WRDFLRLHCYPLESFIDQWPSNPPSF-RQVVGTYSREARALAL 174
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 362 WLKF*KLACYPMRLIWEHWPITP 430
W F KLAC P+ + E WP +P
Sbjct: 169 WRDFLKLACMPLAAVVESWPTSP 191
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 31.1 bits (67), Expect = 0.94
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 177 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 64
+H+ C + GNW+ + + F+ G + V K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 29.1 bits (62), Expect = 3.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 88 NCSCTANKGHGGQWLPISHLRVIE 159
+C C +KG + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 210 DTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL-RHKKFTPN 40
DT++DP++ S HI+ C+ + A+VT V G ++ RKSK L R PN
Sbjct: 204 DTVFDPVALSCGHIY-CYLCSCSA-----ASVTIVDGLKSAERKSKCPLCRQAGVFPN 255
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 445 PRPVRRRYGPVLPNQSH-RITRQLSKLQPFRHPTDVDPPVLK 323
P +R P+LP++ H TR +K+ +V PP+LK
Sbjct: 310 PAKASQRIDPLLPSKVHIDATRSFTKVSQTEIKPEVQPPILK 351
>12_02_0139 - 14277389-14279119
Length = 576
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 689 IDGRDQKVDSRPPNECHVSQGDASKMLPVPVWIR 588
+ G VD PP CHV +G L V+IR
Sbjct: 87 LSGNFAPVDELPPTSCHVIRGSIPSCLAGGVYIR 120
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 686 DGRDQKVDSRPPNECHVSQGDASKMLPVPVWIRKI 582
+G V + P CH GD SK LP+PV + K+
Sbjct: 193 EGFKSLVSTAPICLCHGINGDLSKFLPLPVDMMKM 227
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 686 DGRDQKVDSRPPNECHVSQGDASKMLPVPVWIRKI 582
+G V + P CH GD SK LP+PV + K+
Sbjct: 193 EGFKSLVSTAPICLCHGINGDLSKFLPLPVDMMKM 227
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 382 GVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCHFRHL 501
G L+ D G + AA++A F+ VW WN+C R L
Sbjct: 274 GDLNRVCDSGPVMEKAAKEATMFL--VWIIGWNICLLRLL 311
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 203 SVSSDGLRRRQGWDPD 250
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
>10_08_0757 +
20367348-20367560,20367657-20367904,20371406-20371730,
20372299-20372541
Length = 342
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 362 WLKF*KLACYPMRLIWEHWPITPPN 436
W + +L CYP+ WP PP+
Sbjct: 128 WRDYLRLHCYPLHQFVPDWPSNPPS 152
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 686 DGRDQKVDSRPPNECHVSQGDASKMLPVPVWIRKI 582
DG V+ P CH G+ SK++P P+ + +I
Sbjct: 194 DGFKSLVEKAPICLCHGINGNISKLMPAPIDLTRI 228
>03_01_0154 - 1223879-1224274,1224391-1224585
Length = 196
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 362 WLKF*KLACYPMRLIWEHWPITPPN 436
W + +L CYP+ WP PP+
Sbjct: 122 WRDYLRLHCYPLHRYLPDWPSNPPS 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,777,404
Number of Sequences: 37544
Number of extensions: 498220
Number of successful extensions: 1422
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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