Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31039
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_58937| Best HMM Match : Phytochelatin (HMM E-Value=5.6e-37)         30   2.7  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)                 28   8.2  
SB_13408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)                 28   8.2  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    28   8.2  

>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 92  WWYQAPGSRAIPETTISTSTLSYKTTGSCSVIL 190
           W+Y   GSR IP  T +T  +SY T+    V++
Sbjct: 566 WYYHHVGSRRIPHWTTTTLPISYVTSADLYVMV 598


>SB_58937| Best HMM Match : Phytochelatin (HMM E-Value=5.6e-37)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 CVMDRGPCTKDGKTFKRALPEHCRQRVR 276
           C +D+ P TKD KT K  +   CR  VR
Sbjct: 230 CRLDKTPKTKDSKTAKHQIHGKCRNDVR 257


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/53 (26%), Positives = 34/53 (64%)
 Frame = +2

Query: 593 NSVSLLFIDWCFVFTPFIYFSSMWIRLKLRVIIYVFHRIRILVMIAMATHVAC 751
           +++  +FI + FVF  F++  ++ +RL+LR+ + +  R+R+ + + +  H+ C
Sbjct: 288 STIIFIFI-YIFVFV-FVFIFALRLRLRLRLRLRLRLRLRLRLRLRLHRHLHC 338


>SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 642 NGVKTKHQSINKRLTEFENRNSMFFITIFIRIYCQSN 532
           NG  T    +  R+T   N +  FF  +F R+ CQSN
Sbjct: 10  NGSLTFFYQVFHRITCQSNGSLTFFYRVFHRVTCQSN 46


>SB_14231| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
          Length = 519

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 329 PDR*KKCPESCLLLIRAPRTRCRQCSGRARLKV--FPSFVHGPLSMTHLK 186
           PD+  K  E+C LL+   R   R+ +    L    FP  ++GPL   +L+
Sbjct: 430 PDKATKLKETCQLLLLKKRPSIREVAKVLGLMTSSFPGILYGPLHYRYLE 479


>SB_13408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 830 ILGHLGNTPGVMEFFPSQKGFFSLIEGTPRVW 735
           ++GH+ NTP V+    +       I+ TP +W
Sbjct: 133 VIGHIQNTPPVIGHIQNTPPVIGHIQNTPAIW 164


>SB_56883| Best HMM Match : RVT_1 (HMM E-Value=7.5e-15)
          Length = 459

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 329 PDR*KKCPESCLLLIRAPRTRCRQCSGRARLKV--FPSFVHGPLSMTHLK 186
           PD+  K  E+C LL+   R   R+ +    L    FP  ++GPL   +L+
Sbjct: 398 PDKATKLKETCQLLLLKKRPSIREVAKVLGLMTSSFPGILYGPLHYRYLE 447


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 266 CRQCSGRARLKVFPSFVHGP 207
           C  C+ +A    FPSFV+GP
Sbjct: 710 CEYCTDQAEFDSFPSFVNGP 729


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,889,148
Number of Sequences: 59808
Number of extensions: 569588
Number of successful extensions: 1564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)