Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31033
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   1.7  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   3.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.8  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 489 TITYVNE*EFKIPNDYLLKTLASSKC 566
           T+TYV   + K  N  LLK++ +  C
Sbjct: 174 TVTYVMTGQLKAQNSNLLKSVCADLC 199


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 365 SLVKLPSNYTIVQKFGNSQVNSNKRQKNHQDLFI 466
           +L K P  + +++     Q ++N R+K+H  LF+
Sbjct: 86  ALTKKPLWFKLLKNLKMVQNHNNIREKSHYCLFV 119


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 365 SLVKLPSNYTIVQKFGNSQVNSNKRQKNHQDLFI 466
           +L K P  + +++     Q ++N R+K+H  LF+
Sbjct: 86  ALTKKPLWFKLLKNLKMVQNHNNIREKSHYCLFV 119


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 365 SLVKLPSNYTIVQKF 409
           +L KLP NY I  KF
Sbjct: 403 TLYKLPPNYEIRHKF 417


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 174 ILCKYHQAYSNEMVFQ 221
           +L KYHQ + ++ +FQ
Sbjct: 10  MLPKYHQQFHHQQLFQ 25


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 174 ILCKYHQAYSNEMVFQ 221
           +L KYHQ + ++ +FQ
Sbjct: 10  MLPKYHQQFHHQQLFQ 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,385
Number of Sequences: 336
Number of extensions: 4291
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)