Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31000
         (846 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    56   1e-09
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    56   1e-09
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    56   1e-09
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    56   1e-09
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   7e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    29   0.014

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +1

Query: 394 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WS-VSPLTTARSL 570
           HYT G E+VD VLD +RK  + C  LQGF + HS GGGT  G      S +      R +
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 571 NWEFAIYPAPQVS--TGRRRALQLYPHQPTQTLEHSDCGFSWFDNESHLWTFCPP*SRHL 744
           N  +++ P+P+VS          L  HQ  +  + + C     DNE+ L+  C    R L
Sbjct: 61  N-TYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYC----IDNEA-LYDIC---FRTL 111

Query: 745 KRPN 756
           K PN
Sbjct: 112 KVPN 115


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +1

Query: 394 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WS-VSPLTTARSL 570
           HYT G E+VD VLD +RK  + C  LQGF + HS GGGT  G      S +      R +
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 571 NWEFAIYPAPQVS--TGRRRALQLYPHQPTQTLEHSDCGFSWFDNESHLWTFCPP*SRHL 744
           N  +++ P+P+VS          L  HQ  +  + + C     DNE+ L+  C    R L
Sbjct: 61  N-TYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYC----IDNEA-LYDIC---FRTL 111

Query: 745 KRPN 756
           K PN
Sbjct: 112 KVPN 115


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +1

Query: 394 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WS-VSPLTTARSL 570
           HYT G E+VD VLD +RK  + C  LQGF + HS GGGT  G      S +      R +
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 571 NWEFAIYPAPQVS--TGRRRALQLYPHQPTQTLEHSDCGFSWFDNESHLWTFCPP*SRHL 744
           N  +++ P+P+VS          L  HQ  +  + + C     DNE+ L+  C    R L
Sbjct: 61  N-TYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYC----IDNEA-LYDIC---FRTL 111

Query: 745 KRPN 756
           K PN
Sbjct: 112 KVPN 115


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 56.0 bits (129), Expect = 1e-09
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
 Frame = +1

Query: 394 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WS-VSPLTTARSL 570
           HYT G E+VD VLD +RK  + C  LQGF + HS GGGT  G      S +      R +
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60

Query: 571 NWEFAIYPAPQVS--TGRRRALQLYPHQPTQTLEHSDCGFSWFDNESHLWTFCPP*SRHL 744
           N  +++ P+P+VS          L  HQ  +  + + C     DNE+ L+  C    R L
Sbjct: 61  N-TYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYC----IDNEA-LYDIC---FRTL 111

Query: 745 KRPN 756
           K PN
Sbjct: 112 KVPN 115


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 7e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 77  MRECISVHVGQAGVQIGNACWE 142
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 132 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPELAARTPC 269
           P    T WS AS+   RCP+TR S  E +++  + + P LA  + C
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRS--EAVMTRSTPSSPRLAQASTC 62


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 29.5 bits (63), Expect(2) = 0.014
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 183 CPQTRPSGVETILSTLSSARPELAARTPCCLR 278
           C   RPS ++   ++ S  RP+LAA +  C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195



 Score = 21.8 bits (44), Expect(2) = 0.014
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 126 VMPAGSFTAWSTASSLMARCPQTRPSGV 209
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,148
Number of Sequences: 2352
Number of extensions: 21369
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89718867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)