Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30999
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    36   0.019
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    36   0.019

>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 247 FFYLSIDYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTL 113
           FFY +  +   N  Y F C Y +    DA++  CY +++  L  L
Sbjct: 653 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFFTALPVL 697


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 247 FFYLSIDYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTL 113
           FFY +  +   N  Y F C Y +    DA++  CY +++  L  L
Sbjct: 824 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFFTALPVL 868


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,616,874
Number of Sequences: 27780
Number of extensions: 84286
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)