Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30996
(880 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 115 5e-26
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 115 5e-26
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 113 1e-25
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 31 1.0
At1g75050.1 68414.m08717 thaumatin-like protein, putative / path... 30 2.3
At5g53240.1 68418.m06618 expressed protein contains Pfam profile... 29 3.1
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 3.1
At3g50610.1 68416.m05534 hypothetical protein 29 4.1
At5g55270.1 68418.m06888 hypothetical protein contains Pfam prof... 29 5.4
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 29 5.4
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 29 5.4
At5g04470.1 68418.m00445 expressed protein 28 7.2
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 9.5
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 115 bits (276), Expect = 5e-26
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 444 PEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSSYGLVVKQ 623
P +TSFFQ L+IPTKI+KGT+E T ++ + SYGLVV+
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQS 193
Query: 624 VYDSGNYFCT*NFWDIKPEDSSVPSFQAG-SLLNVAALS 737
VYD+G+ F D+ ED V F +G S++ AL+
Sbjct: 194 VYDNGSVFSP-EVLDL-TEDQLVEKFASGISMVTSLALA 230
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIR 44
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SEA LL L I PF
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPF 185
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 47 LRGDSVVLMGKNTMMKRSVRIH 68
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 115 bits (276), Expect = 5e-26
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 74 NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133
Query: 444 PEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSSYGLVVKQ 623
P +TSFFQ L+IPTKI+KGT+E T ++ + SYGLVV+
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQS 193
Query: 624 VYDSGNYFCT*NFWDIKPEDSSVPSFQAG-SLLNVAALS 737
VYD+G+ F D+ ED V F +G S++ AL+
Sbjct: 194 VYDNGSVFSP-EVLDL-TEDQLVEKFASGISMVTSLALA 230
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIR 44
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SEA LL L I PF
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPF 185
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 47 LRGDSVVLMGKNTMMKRSVRIH 68
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 113 bits (273), Expect = 1e-25
Identities = 72/173 (41%), Positives = 98/173 (56%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL
Sbjct: 75 NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134
Query: 444 PEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSSYGLVVKQ 623
P +TSFFQ L+IPTKI+KGT+E T ++ + SYGLVV+
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVES 194
Query: 624 VYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPH 782
VYD+G+ F ++ ED V F AG + + ALS + P APH
Sbjct: 195 VYDNGSVF-NPEVLNL-TEDDLVEKFAAGVSM-ITALSLAI-SYPTVA-AAPH 242
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 68 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIR 45
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SEA LL L I PF
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG S+VLMGKNTMM+++++ H
Sbjct: 48 LRGDSVVLMGKNTMMKRSVRIH 69
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 421 PPTTPA--SVQRKPLSSKLFPSLPKFQRVLLNHQRCTHL 531
P T+PA S R P SS L PS+P+ + L+ +RC+++
Sbjct: 22 PVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYV 60
>At1g75050.1 68414.m08717 thaumatin-like protein, putative /
pathogenesis-related protein, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, SP|P28493 Pathogenesis-related protein 5
precursor (PR-5) {Arabidopsis thaliana}; contains Pfam
profile: PF00314 Thaumatin family
Length = 257
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Frame = +1
Query: 55 G*GGQGYLEV*LLR*DHPTLGRVPKMFHRGCR*RGLATD--AADPXSLRGSSIVLMGKNT 228
G GG+ + +V L+ + +G P+ C G D A P LR LM +T
Sbjct: 129 GDGGKDFYDVSLVDGYNVEMGIKPQGGSGDCHYAGCVADVNAVCPNELR-----LMDPHT 183
Query: 229 MMRKAIKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNC 357
+ A K CC + AT +CSP S + C
Sbjct: 184 GIIAACKSACAAFNSEEFCCTGAHATPQTCSPTHYSAMFKSAC 226
>At5g53240.1 68418.m06618 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 361
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 864 FLSKLKPFCEPATDGPKGFFETHLANGN 781
FLSK +PFC PA+ P+G N
Sbjct: 295 FLSKSEPFCVPASSFPQGLHSLQAMRSN 322
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 261 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 359
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 207 RAHGKKHYDAQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 383
+ + + H+ A + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 384 RPGAIAPLSVVIPAHNTGLGPEK 452
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At5g55270.1 68418.m06888 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 361
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 864 FLSKLKPFCEPATDGPKGFFETHLANGNAG 775
FLSK +PFC P + P F H+ + G
Sbjct: 301 FLSKSEPFCVPVSSFPGMMFPNHVNLADVG 330
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 382 LVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLNHQRC 522
LV PL QSSFP PA +Q P +S S+ + +LLN C
Sbjct: 1862 LVSAPLQLQQSSFPAPGPAPLQ--PQASSFPSSVSRPSALLLNFAVC 1906
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +1
Query: 382 LVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLNHQRC 522
LV PL QSSFP PA +Q P +S S+ + +LLN C
Sbjct: 1862 LVSAPLQLQQSSFPAPGPAPLQ--PQASSFPSSVSRPSALLLNFAVC 1906
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 394 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVL 504
P P Q PP+TP+S+ + KL SL K++ ++
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIV 87
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 412 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 299
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,371,065
Number of Sequences: 28952
Number of extensions: 523854
Number of successful extensions: 1592
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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