Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30992
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative stron...   124   8e-29
At1g63830.2 68414.m07224 proline-rich family protein contains pr...    31   1.1  
At1g63830.1 68414.m07223 proline-rich family protein contains pr...    31   1.1  
At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR...    29   4.3  
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR...    29   4.3  
At2g20010.1 68415.m02339 expressed protein                             28   5.6  
At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    28   7.4  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    27   9.8  

>At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative strong
           similarity to L-lactate dehydrogenase from Lycopersicon
           esculentum (GI:1620970, GI:1620972), Hordeum vulgare
           (SP|P22988, SP|P22989); contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 353

 Score =  124 bits (298), Expect = 8e-29
 Identities = 87/225 (38%), Positives = 126/225 (56%), Gaps = 13/225 (5%)
 Frame = +2

Query: 2   IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
           IIP L K SPD+IL+I SNPVD+LTYV WK+SG P +RV      LG GT     +  +R
Sbjct: 140 IIPPLAKASPDSILIIVSNPVDVLTYVAWKLSGFPVNRV------LGSGT----NLDSSR 189

Query: 182 YRYHVLPXXXXXXXXXXXX-------SSMVC---INIAGVR-LSDLN-NQIGTDDDPENW 325
           +R+ +                     SS+     I++ G+  LS L  NQI  +   +  
Sbjct: 190 FRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGIPVLSFLEKNQIAYEK--QTL 247

Query: 326 KELHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIE-DE 502
           +++H+ VV SAYEVI LKGYTSWAIG S+A + R IL +   +H V+   +G +G++  +
Sbjct: 248 EDIHQAVVGSAYEVIGLKGYTSWAIGYSVANLARTILRDQRKIHPVTVLARGFYGVDGGD 307

Query: 503 VFLSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSWLKLRDNL 637
           VFLSLP +L   GV  V    +T+ E  +L  +  K+ L+++  L
Sbjct: 308 VFLSLPALLGRNGVVAVTNVHMTDEEAEKLQKS-AKTILEMQSQL 351



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 27/55 (49%), Positives = 39/55 (70%)
 Frame = +3

Query: 90  RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWSA 254
           +L+G      +GSGTNLDS+RFR+L++D L +       +I+GEHGDSSV +WS+
Sbjct: 169 KLSGFPVNRVLGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSS 223


>At1g63830.2 68414.m07224 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 102 CLST-AFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIG 218
           CL+T  F+  G ++ S RF  LL D   I TT C   IIG
Sbjct: 84  CLATEVFLCFGNSVASTRF--LLQDEFNIQTTQCDNCIIG 121


>At1g63830.1 68414.m07223 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains 1 predicted transmembrane domain
          Length = 232

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 102 CLST-AFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIG 218
           CL+T  F+  G ++ S RF  LL D   I TT C   IIG
Sbjct: 84  CLATEVFLCFGNSVASTRF--LLQDEFNIQTTQCDNCIIG 121


>At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 485 HGIEDEVFLSLPCVLSHCGVSDVI 556
           HG   E+FL + C+L+ CGV  +I
Sbjct: 360 HGNYQEIFLYIACLLNCCGVEYII 383


>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1229

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 485 HGIEDEVFLSLPCVLSHCGVSDVI 556
           HG   E+FL + C+L+ CGV  +I
Sbjct: 424 HGNYQEIFLYIACLLNCCGVEYII 447


>At2g20010.1 68415.m02339 expressed protein
          Length = 834

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 530 SHCGVSDVIRQPLTELEVAQLSGNLLKSWLKLR 628
           S  G   VIR+ +   E   + GNL+KSW+K+R
Sbjct: 419 SEDGGKSVIRE-MPPFEAEVVIGNLVKSWIKIR 450


>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -2

Query: 439 REYSPHDLSQ-RQSDSPGSVSLQFDDFVSTFHDILVKLLPVLRIVVGS--DLIVEITEAY 269
           + Y P D+    Q D+P         F+S         L VL I+  S     VEIT++ 
Sbjct: 89  KTYLPLDVKPTEQPDAPNDTGYYRVTFISPLGPGETVSLEVLYILTHSLEPFPVEITQSE 148

Query: 268 SRYVYADHTGTLLSP 224
           S+ VY   +  +LSP
Sbjct: 149 SQLVYYHDSAVILSP 163


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 445 SVREYSPHDLSQRQSDSPGSVSLQFDDFVSTFHDI 341
           SV++  P D S + ++ PG + L F     TF D+
Sbjct: 784 SVKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDL 818


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,676
Number of Sequences: 28952
Number of extensions: 310145
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)