BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30985 (715 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g61900.2 68414.m06984 expressed protein contains similarity t... 29 2.3 At1g61900.1 68414.m06983 expressed protein contains similarity t... 29 2.3 At1g55140.1 68414.m06297 URF 4-related weak similarity to URF 4 ... 29 4.0 At1g16110.1 68414.m01931 wall-associated kinase, putative contai... 29 4.0 At1g49100.1 68414.m05505 leucine-rich repeat protein kinase, put... 27 9.3 >At1g61900.2 68414.m06984 expressed protein contains similarity to glutamic acid/alanine-rich protein GI:6707830 from [Trypanosoma congolense] Length = 413 Score = 29.5 bits (63), Expect = 2.3 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 440 CNEDEPHTPSLPLLTSIDKLETLTCSTNSLTILQKLNTT 324 C E + L T I L+ L C+T+ T LQKLN T Sbjct: 287 CRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNIT 325 >At1g61900.1 68414.m06983 expressed protein contains similarity to glutamic acid/alanine-rich protein GI:6707830 from [Trypanosoma congolense] Length = 433 Score = 29.5 bits (63), Expect = 2.3 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 440 CNEDEPHTPSLPLLTSIDKLETLTCSTNSLTILQKLNTT 324 C E + L T I L+ L C+T+ T LQKLN T Sbjct: 287 CRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNIT 325 >At1g55140.1 68414.m06297 URF 4-related weak similarity to URF 4 (GI:49224) [Synechococcus sp.] Length = 305 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -3 Query: 245 TYKTCYVINLSRVSYIPIHITMCDHTGEMLHLFLPPLS 132 T CYVI ++ Y+ + + C + H PPLS Sbjct: 157 TMSLCYVILTNKFLYLSLAVLGCKNIYARRHFLFPPLS 194 >At1g16110.1 68414.m01931 wall-associated kinase, putative contains similarity to wall-associated kinase 2 GI:4826399 from [Arabidopsis thaliana] Length = 642 Score = 28.7 bits (61), Expect = 4.0 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 557 SFKMKEKCTCKYDNRSIFKIR*CQCN 480 S+ +KC+C+YD S R C CN Sbjct: 282 SYSSFDKCSCEYDYFSGMSYRICYCN 307 >At1g49100.1 68414.m05505 leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069 Length = 888 Score = 27.5 bits (58), Expect = 9.3 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = -3 Query: 458 RPFNVMCNEDEPHTPSLPLLTSIDKL-----ETLTCSTNSLTILQKLNTTTARI 312 R FNV+ N + P P + SID + TLTC S +LQ + TT + + Sbjct: 293 REFNVLLNGKVYYGPYSPKMLSIDTMSPQPDSTLTCKGGS-CLLQLVKTTKSTL 345 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,966,228 Number of Sequences: 28952 Number of extensions: 296325 Number of successful extensions: 537 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 527 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 537 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1545769616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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