Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30972
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37400.1 68417.m05295 cytochrome P450 family protein similar ... 29 1.9
At2g46640.1 68415.m05818 hypothetical protein and genefinder; e... 29 1.9
At5g44660.1 68418.m05472 expressed protein similar to unknown pr... 29 3.3
At4g29150.1 68417.m04171 calmodulin-binding family protein conta... 29 3.3
At5g57220.1 68418.m07149 cytochrome P450, putative similar to C... 28 4.3
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF... 28 4.3
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF... 28 4.3
At4g28200.1 68417.m04042 expressed protein 28 4.3
At4g28160.1 68417.m04038 hydroxyproline-rich glycoprotein family... 27 7.5
At1g61850.1 68414.m06979 patatin family protein similar to membr... 27 7.5
>At4g37400.1 68417.m05295 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase CYP91A2, Arabidopsis
thaliana, D78607
Length = 501
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 376 NLPIYLRSQCLRTFRLSPNSPAGTPQSPT 290
NLP YL++ TFRL P +P P+SPT
Sbjct: 342 NLP-YLQNIVSETFRLYPAAPLLVPRSPT 369
>At2g46640.1 68415.m05818 hypothetical protein and genefinder;
expression supported by MPSS
Length = 310
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 495 CTSIMDGVSLQLMENSL*TKILIFNRRKYVASRHHVFCYLIYLYI 361
C I+ V + + TK+L+F ++ ++V C+LIY YI
Sbjct: 262 CVGIVMTVEMYCFLLTNITKLLVFVPVMHIVFYYYVICFLIYTYI 306
>At5g44660.1 68418.m05472 expressed protein similar to unknown
protein (pir||T05327)
Length = 423
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 361 LRSQCLRTFRLSPNSPAGTPQSPTPLPRLL 272
+ S LR R S +SP P SP PRLL
Sbjct: 379 MESPSLRQVRFSTSSPVSYPTSPAISPRLL 408
>At4g29150.1 68417.m04171 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 383
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 47 PRSLEPLSQWDNITCRVPTTRSTP--MGMSHNRYLCGD*GG 163
PR P +W+ + + PT +STP G S R +C GG
Sbjct: 254 PRLSMPKPEWEECSSKFPTAQSTPRFSGGSPARSVCCSGGG 294
>At5g57220.1 68418.m07149 cytochrome P450, putative similar to
Cytochrome P450 (SP:O65790) [Arabidopsis thaliana];
Cytochrome P450 (GI:7415996) [Lotus japonicus]
Length = 491
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 376 NLPIYLRSQCLRTFRLSPNSPAGTPQSPT 290
NLP YL++ TFRL P +P P+SP+
Sbjct: 342 NLP-YLQNIVSETFRLCPAAPLLVPRSPS 369
>At5g46780.2 68418.m05763 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 403 QPSPCFLLFNL-PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERPSPLYVLKH 227
Q +P L++N+ RS + L S PQ+ P P +V+ RP+PL L H
Sbjct: 41 QQNPQALVYNINKTDFRSIVQQLTGLGSTSSVNPPQTNHPKPPNSRLVKVRPAPLTQLNH 100
>At5g46780.1 68418.m05762 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 403 QPSPCFLLFNL-PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERPSPLYVLKH 227
Q +P L++N+ RS + L S PQ+ P P +V+ RP+PL L H
Sbjct: 41 QQNPQALVYNINKTDFRSIVQQLTGLGSTSSVNPPQTNHPKPPNSRLVKVRPAPLTQLNH 100
>At4g28200.1 68417.m04042 expressed protein
Length = 648
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 197 EQKEVLTSAEVL*HVQRRRPFPYYNKKP 280
E++E+ T AE+ V++RR F Y K+P
Sbjct: 20 ERREIFTRAEIAEIVKQRRKFEYRLKRP 47
>At4g28160.1 68417.m04038 hydroxyproline-rich glycoprotein family
protein similar to Putative cell wall protein precursor
(Swiss-Prot:P47925) [Arabidopsis thaliana]
Length = 111
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 4 SFNVQNANLTFVLLAAILG-TALAVGQYYVPRSYYTIDSDGHESQPVPLRRLRRSLNP 174
++ +QN T VL++ ILG T G Y+P S T H PV + SL P
Sbjct: 2 AYTLQNLTATIVLVSLILGCTEEVTGMRYIPIS-PTPSESKHSDFPVNMVPQPSSLIP 58
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 368 YIFAVSVPENIQIISEFSGGHTPIANTAAPASCYSTGTAF 249
Y + V PE S+ SGG T ++TA+ + Y +AF
Sbjct: 614 YQYPVGTPEMSYAFSDHSGGSTLTSSTASDQAGYYKQSAF 653
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,739
Number of Sequences: 28952
Number of extensions: 271765
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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