Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30966
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    65   5e-12
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    29   0.33 
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    26   3.1  
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    25   5.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   9.5  

>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 64.9 bits (151), Expect = 5e-12
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +3

Query: 132 AVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           +   V EPLDL+RLSLDE +YVK+R +REL G+LHAYD+HL
Sbjct: 3   SAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHL 43



 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +2

Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPP 397
           +MVLGDA                  +T ++   MLFVRGD VIL++PP
Sbjct: 44  NMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           PL+LI   +   ++V M++ERE  G L  +D ++
Sbjct: 7   PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYV 40


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 43  NLKIATTLTRHKTSYFHNNI*KW 111
           NLK+ +T+ ++ ++Y HN+   W
Sbjct: 205 NLKVVSTVAKYNSAYIHNSKKFW 227


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 341 RTIPMLFVRGDGVILV 388
           R I  +F+RGDGV+LV
Sbjct: 94  RFISKMFLRGDGVVLV 109


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 201 MRNERELRGKLHAY 242
           ++NE+ELR KL AY
Sbjct: 735 LQNEKELRSKLEAY 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,274
Number of Sequences: 5004
Number of extensions: 22574
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)