BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30947 (572 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 36 0.006 SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 35 0.010 SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 32 0.069 SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 32 0.069 SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.091 SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 30 0.28 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.28 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.37 SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 29 0.37 SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.48 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.64 SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 0.84 SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 28 0.84 SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 28 0.84 SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 1.5 SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 27 1.5 SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.6 SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.6 SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 4.5 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 4.5 SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 4.5 SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.5 SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 4.5 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 6.0 SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 6.0 SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 6.0 SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 6.0 SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.0 SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 7.9 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.9 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.9 >SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 35.5 bits (78), Expect = 0.006 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Frame = +3 Query: 36 QLANIEKEMKS-REKEAEERLRNADAENKTLT-KKLEQQTSKSSELAGVLIKFEERVKQR 209 Q AN +++ K+ K +RL+N+ + L K+LEQ+ ++ E VL+ F+ QR Sbjct: 256 QAANQKRKSKTVSSKNNFQRLQNSSLHSIFLDPKQLEQKAQEAEERKNVLLNFDRTSAQR 315 Query: 210 DKRLEEAA 233 + ++EAA Sbjct: 316 TRIIDEAA 323 >SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 34.7 bits (76), Expect = 0.010 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +3 Query: 51 EKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEA 230 E ++K REK+ E RL + K+L ++ + + + +FEER K K+ +E Sbjct: 230 EDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQ 289 Query: 231 AA 236 ++ Sbjct: 290 SS 291 Score = 32.3 bits (70), Expect = 0.052 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +3 Query: 9 EQLQKEFGVQLANIEK-EMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIK 185 E+ Q + ++ I K E+K KE + + R D EN+ L K+E+ +E A L + Sbjct: 206 EEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLL--KVEEHEKSLNERATKLSE 263 Query: 186 FEERVKQRDKRLEE 227 E R K EE Sbjct: 264 ANENFNNRFKEFEE 277 Score = 31.1 bits (67), Expect = 0.12 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +3 Query: 3 QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLT---KKLEQQTSKSSELAG 173 + E+ E +L+ + +R KE EER ++A +NK + K QT + EL Sbjct: 249 EHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELIN 308 Query: 174 VLIKFEERVKQRDKRLEEA 230 L K + + LEEA Sbjct: 309 SLEKKVSDIALEKQLLEEA 327 >SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 316 Score = 31.9 bits (69), Expect = 0.069 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Frame = +3 Query: 6 KEQLQKE---FGVQLANIEKEMKSRE-KEAEERLRNADAENKTLTKKLE-QQTSKSSELA 170 +E L+KE Q A IEKE + +E EE R+ + +++ ++ E ++ + E Sbjct: 22 RELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV 81 Query: 171 GVLIKFEERVKQRDKRLEEAAAHETALRARSRP 269 +++ EER+K+R + AA + L+ RP Sbjct: 82 EKILRDEERIKKRKIQKNRAANLQRTLQPPKRP 114 >SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual Length = 1526 Score = 31.9 bits (69), Expect = 0.069 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Frame = +3 Query: 6 KEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLE----QQTSKSSELAG 173 KE++ + +LANIE S K+ E L+ A K + +LE ++TSK L Sbjct: 878 KEEILRRTQERLANIEDSF-SETKQQNENLQRESASLKQINNELESELLEKTSKVETLLS 936 Query: 174 VLIKFEERVKQRDKRLEEAAAHETALR 254 + +E++ +K L + +LR Sbjct: 937 EQNELKEKLSLEEKDLLDTKGELESLR 963 >SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 340 Score = 31.5 bits (68), Expect = 0.091 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +3 Query: 27 FGVQLANIEKEMKSREKEAEERLRNA--DAENKTLTKKLEQQTSKSSELAGVLIKFEERV 200 F +L NI + MK+ EE +RN +++NK L L++ ++ +G+L+ F + Sbjct: 99 FPEKLLNILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVL 158 Query: 201 KQ 206 KQ Sbjct: 159 KQ 160 >SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 401 Score = 29.9 bits (64), Expect = 0.28 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%) Frame = +3 Query: 9 EQLQKEFGVQLANIEKEMKSREK---EAEERLRNADAENKTLTKKLEQQTSKSSELA--- 170 E+L+K+ +LA K ++ EK +AEE L+ ++ E TLT ++E T ++L Sbjct: 95 ERLKKD-SQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESLTQDITDLRQQN 153 Query: 171 GVLIKFEERVKQRDKRLEEAAAHE 242 L++ + + + K+ E A E Sbjct: 154 ASLVEENQLLSTQSKQWERRARDE 177 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 29.9 bits (64), Expect = 0.28 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 12 QLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQ-QTSKSSELAGVLIKF 188 QL++E V+L + + S+ +AE +L + + ENK+L +++ Q + SS+ Sbjct: 368 QLEEEM-VELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSK-------- 418 Query: 189 EERVKQRDKRLEEA 230 ++ VKQ +LEEA Sbjct: 419 DKMVKQVSSQLEEA 432 Score = 25.4 bits (53), Expect = 6.0 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +3 Query: 6 KEQLQKEFGVQLANIEKEMKSRE---KEAEERLRNADAENKTLTKKLEQQTSKSSELAGV 176 +E+L K +QL E+ S + K+ E + + ++T+TK+L+ +SK +L Sbjct: 587 QEKLAKSV-MQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLE 645 Query: 177 LIKFEER 197 FE++ Sbjct: 646 RANFEQK 652 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 29.5 bits (63), Expect = 0.37 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%) Frame = +3 Query: 3 QKEQLQKEFGVQLANIEKEMKSREK-----EAEERLRNADAENKTLTKKLEQQTSK---S 158 QKE++ K+ +LAN+E + ++K EA ++R D + L K L SK S Sbjct: 380 QKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYLSKELAS 439 Query: 159 SELAGVLIKFEERVKQRDKRLEE 227 +E A L+K ++ VK +E Sbjct: 440 TEKAFRLVK-QQTVKSSHSHYQE 461 >SPBC365.07c |||TATA element modulatory factor homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 29.5 bits (63), Expect = 0.37 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = +3 Query: 33 VQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRD 212 ++L N K++K EAE +L+ D + T ++ +L +FE+R+ + Sbjct: 60 LKLNNTIKQLKKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILE 119 Query: 213 KRLEE 227 K E+ Sbjct: 120 KEKED 124 >SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 111 Score = 29.1 bits (62), Expect = 0.48 Identities = 23/63 (36%), Positives = 33/63 (52%) Frame = +3 Query: 72 EKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEAAAHETAL 251 EK+A R ADA+ K++EQ+ K E IK E+ +R+K E+ AAH + Sbjct: 18 EKKAYNRSGLADAQRTPYEKRMEQK-RKLDE-----IKEREKELKREKE-EQRAAHAEKI 70 Query: 252 RAR 260 R R Sbjct: 71 RTR 73 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 28.7 bits (61), Expect = 0.64 Identities = 17/86 (19%), Positives = 45/86 (52%) Frame = +3 Query: 3 QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLI 182 ++++LQK+ + +KE + ++E E + R + + + K ++ + +L I Sbjct: 76 KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135 Query: 183 KFEERVKQRDKRLEEAAAHETALRAR 260 + +E+ +++++R ++ E A R R Sbjct: 136 RLQEQQRRKEERDQKLREKEEAQRLR 161 Score = 25.0 bits (52), Expect = 7.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 51 EKEMKSREKEAEERLRNADAENK 119 E++ K REKE +RLR NK Sbjct: 146 ERDQKLREKEEAQRLRQEQILNK 168 >SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1184 Score = 28.3 bits (60), Expect = 0.84 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +3 Query: 51 EKEMKSREKEAEERLRNADAENKTLTKKLEQ-QTSKSSELAGVLIKFEERVKQRDKRLEE 227 E+E K + KEA +RL+ E K L KK E+ + ++ L K+ +++ + ++ Sbjct: 712 ERERKEQAKEA-KRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQ 770 Query: 228 AAAH 239 A A+ Sbjct: 771 AIAN 774 >SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 28.3 bits (60), Expect = 0.84 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +3 Query: 9 EQLQKEFGVQLANIEKEMKS---REKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVL 179 + L F L N E K+ +EK+ E R DA + + K ++++ +L Sbjct: 116 DYLNNSFLANLENSLAEFKALDVKEKKMENRRLVFDALSTKIQKAKKEESKLEEDLRNAR 175 Query: 180 IKFEERVKQRDKRL 221 K+EE +++ + R+ Sbjct: 176 AKYEESLEEFEDRM 189 >SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizosaccharomyces pombe|chr 1|||Manual Length = 1604 Score = 28.3 bits (60), Expect = 0.84 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +3 Query: 39 LANIEKEMKSR-EKEAEERLRNADAENKTLTKKLEQQTSKSSELA 170 L K K++ K A + +NA+ E K+ KK +++TSK+ + A Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEA 572 >SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 633 Score = 27.5 bits (58), Expect = 1.5 Identities = 21/76 (27%), Positives = 34/76 (44%) Frame = +3 Query: 9 EQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKF 188 E+LQ+E A IEK K+ E +E +KT + + K E+ G+L + Sbjct: 22 EELQREADEAAAEIEKMQKTSLDERKE------LSSKTKEFRKQPDEVKLGEMKGLLKLY 75 Query: 189 EERVKQRDKRLEEAAA 236 + + KR + A A Sbjct: 76 QSGIDSLTKRAKSAEA 91 >SPAC3A12.13c |||translation initiation factor eIF3 complex subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 274 Score = 27.5 bits (58), Expect = 1.5 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +3 Query: 51 EKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEA 230 + E E+E +E L+N + Q S+++ + K +ER ++ + EA Sbjct: 37 DDEEDEDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEA 96 Query: 231 AAHETALRA 257 AA E +L + Sbjct: 97 AAKEESLES 105 >SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 26.6 bits (56), Expect = 2.6 Identities = 17/80 (21%), Positives = 43/80 (53%) Frame = +3 Query: 3 QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLI 182 ++EQ +K+ ++ E++ K +E+E + + + +A+ + + + EQ+ + E ++ Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAR--EQRLREEEEKR--IL 702 Query: 183 KFEERVKQRDKRLEEAAAHE 242 + +R ++ DK EE E Sbjct: 703 EERKRREKLDKEEEERRRRE 722 >SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/65 (24%), Positives = 28/65 (43%) Frame = +3 Query: 33 VQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRD 212 V++A E+ REKEA ER+ + +N + + T S G + E + Sbjct: 18 VEMAEFERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRKEGNMKVTAEEIGLET 77 Query: 213 KRLEE 227 + +E Sbjct: 78 ENFDE 82 >SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 633 Score = 25.8 bits (54), Expect = 4.5 Identities = 16/85 (18%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Frame = +3 Query: 6 KEQLQKEFGVQLANIEKEMKSRE-KEAEERLRNADAENKTL---TKKLEQQTSKSSELAG 173 ++Q+ +E +++ +E+ ++ +E+ + + D + + + KKL+ + S+ +E Sbjct: 456 RQQMTREMEERVSEVERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIA 515 Query: 174 VLIKFEERVKQRDKRLEEAAAHETA 248 L + E + + + LEE + E++ Sbjct: 516 QLEQIIEELHEELRSLEEESIKESS 540 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 25.8 bits (54), Expect = 4.5 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +3 Query: 96 RNADAENKTLTKKLEQQTSKSS--ELAGVLIKFEE 194 + AD EN KK+++QT KSS E L K +E Sbjct: 225 QTADLENLETDKKIDKQTFKSSLYENLSTLFKSDE 259 >SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 710 Score = 25.8 bits (54), Expect = 4.5 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +3 Query: 75 KEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDK 215 K + A + T +QQT+ S+ L+ ++ + R K++DK Sbjct: 399 KNLASSTKPTSASSSTKAPLTKQQTNPSTPLSSIMAGLKGREKEKDK 445 >SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual Length = 2410 Score = 25.8 bits (54), Expect = 4.5 Identities = 17/60 (28%), Positives = 27/60 (45%) Frame = +3 Query: 153 KSSELAGVLIKFEERVKQRDKRLEEAAAHETALRARSRPGT*PLSSWRRPCWSARTGCTR 332 +SS +L +FE+ +Q L + LRARS P+S W+ + GC + Sbjct: 1561 ESSATPHLLKQFEQACQQA---LSSSQRTRARLRARSAKQRFPVSQWKAKLEALTDGCIK 1617 >SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 803 Score = 25.8 bits (54), Expect = 4.5 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -3 Query: 213 CHAASRAPRTL*GRPPARCSYSFV-VPVSSSASCSLRQRFSISPRLPS 73 C AA P T +PP + +P S+A S + F++ PRL S Sbjct: 284 CSAAVDCPHTTIPKPPYQSDTDLTELPTKSTAQFS-DETFTVQPRLKS 330 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 25.4 bits (53), Expect = 6.0 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +3 Query: 42 ANIEKEMKSREKEAEERLRNADAEN-KTLTKKLEQQTSKSSELAGV 176 A E+E + +++ EE+ R A E+ K KKL ++ +KSS+ A + Sbjct: 640 AQKEEEERIAQQKREEKRRLAYEESLKRHAKKLHEKKTKSSQDATI 685 >SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 952 Score = 25.4 bits (53), Expect = 6.0 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 51 EKEMKSREKEAEERLRNADAENKTL-TKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEE 227 E+ M + ++E+ LR+ E TK++ + +SEL + ER+++R+ L++ Sbjct: 888 EEFMPGKNAKSEKSLRSVFQEQLMRETKRVRKLEKVNSELKLHCFELSERLREREHTLQQ 947 >SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 25.4 bits (53), Expect = 6.0 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = -3 Query: 60 SLFLCWRVEPRIPSAIVPFA 1 S + WR P IP A P+A Sbjct: 159 SFLMVWRTNPNIPPATSPYA 178 >SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 833 Score = 25.4 bits (53), Expect = 6.0 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 57 EMKSREKEAEERLRNADAENKTLTKK 134 E+K ++KE EE LRN + E K KK Sbjct: 103 ELKLQKKEKEEELRNLE-EEKAKKKK 127 >SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 959 Score = 25.4 bits (53), Expect = 6.0 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 12 QLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFE 191 +L EF ++A +EK S KEAE L+ + L ++ + +A + + + Sbjct: 767 RLANEFDARIAKLEKMPFSPAKEAE--LKKISVDLSKLVVAAVRKHAMKERIAKITKQVQ 824 Query: 192 ERVK 203 E VK Sbjct: 825 EHVK 828 >SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 266 Score = 25.0 bits (52), Expect = 7.9 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Frame = +3 Query: 57 EMKSREKEAEERLRNADAENKTLT---KKLEQQTSKSSELAGVLIKFEERVKQR----DK 215 + K +EK +E+++ + NKTL+ ++++ Q ++ + A + + KQ K Sbjct: 71 DSKDKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKK 130 Query: 216 RLEEA 230 RLE++ Sbjct: 131 RLEKS 135 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 25.0 bits (52), Expect = 7.9 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +3 Query: 39 LANIEKEMKSREKEAEERLRNADAEN--KTLTKKLEQQTSKSSELAGVLIK 185 + NIE+E ++ E +E L + D EN + +T++ + K S+ V+ K Sbjct: 273 IKNIEREEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNK 323 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 25.0 bits (52), Expect = 7.9 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = +2 Query: 260 IEARDLTIKQLEKTVLERENRLYQVTTQLDEMKRVQEMVAKLMSKSTSANCATDVEQ 430 + AR + + EKT E EN+L + + ++ K ++E K S++T N ++Q Sbjct: 1593 LAARSELVAEKEKTKEELENQLNEKSQRI---KELEEQAQKNSSENTHDNIDDMIKQ 1646 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,542,428 Number of Sequences: 5004 Number of extensions: 22537 Number of successful extensions: 158 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 154 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 244081442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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