SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30947
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    36   0.006
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    35   0.010
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    32   0.069
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    32   0.069
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.091
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    30   0.28 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    30   0.28 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    29   0.37 
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    29   0.37 
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.48 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    29   0.64 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    28   0.84 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   0.84 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   0.84 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   1.5  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    27   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   4.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.5  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   4.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   6.0  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   6.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   6.0  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.0  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   7.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   7.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.9  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +3

Query: 36  QLANIEKEMKS-REKEAEERLRNADAENKTLT-KKLEQQTSKSSELAGVLIKFEERVKQR 209
           Q AN +++ K+   K   +RL+N+   +  L  K+LEQ+  ++ E   VL+ F+    QR
Sbjct: 256 QAANQKRKSKTVSSKNNFQRLQNSSLHSIFLDPKQLEQKAQEAEERKNVLLNFDRTSAQR 315

Query: 210 DKRLEEAA 233
            + ++EAA
Sbjct: 316 TRIIDEAA 323


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 51  EKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEA 230
           E ++K REK+ E RL   +   K+L ++  + +  +        +FEER K   K+ +E 
Sbjct: 230 EDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQ 289

Query: 231 AA 236
           ++
Sbjct: 290 SS 291



 Score = 32.3 bits (70), Expect = 0.052
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 9   EQLQKEFGVQLANIEK-EMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIK 185
           E+ Q +  ++   I K E+K   KE + + R  D EN+ L  K+E+     +E A  L +
Sbjct: 206 EEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLL--KVEEHEKSLNERATKLSE 263

Query: 186 FEERVKQRDKRLEE 227
             E    R K  EE
Sbjct: 264 ANENFNNRFKEFEE 277



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLT---KKLEQQTSKSSELAG 173
           + E+   E   +L+   +   +R KE EER ++A  +NK  +    K   QT +  EL  
Sbjct: 249 EHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELIN 308

Query: 174 VLIKFEERVKQRDKRLEEA 230
            L K    +    + LEEA
Sbjct: 309 SLEKKVSDIALEKQLLEEA 327


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
 Frame = +3

Query: 6   KEQLQKE---FGVQLANIEKEMKSRE-KEAEERLRNADAENKTLTKKLE-QQTSKSSELA 170
           +E L+KE      Q A IEKE +    +E EE  R+ +  +++  ++ E ++  +  E  
Sbjct: 22  RELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV 81

Query: 171 GVLIKFEERVKQRDKRLEEAAAHETALRARSRP 269
             +++ EER+K+R  +   AA  +  L+   RP
Sbjct: 82  EKILRDEERIKKRKIQKNRAANLQRTLQPPKRP 114


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = +3

Query: 6    KEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLE----QQTSKSSELAG 173
            KE++ +    +LANIE    S  K+  E L+   A  K +  +LE    ++TSK   L  
Sbjct: 878  KEEILRRTQERLANIEDSF-SETKQQNENLQRESASLKQINNELESELLEKTSKVETLLS 936

Query: 174  VLIKFEERVKQRDKRLEEAAAHETALR 254
               + +E++   +K L +      +LR
Sbjct: 937  EQNELKEKLSLEEKDLLDTKGELESLR 963


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 27  FGVQLANIEKEMKSREKEAEERLRNA--DAENKTLTKKLEQQTSKSSELAGVLIKFEERV 200
           F  +L NI + MK+     EE +RN   +++NK L   L++ ++     +G+L+ F   +
Sbjct: 99  FPEKLLNILRNMKTILINTEETVRNRFEESQNKKLVALLDKNSTTLDISSGILLNFTVVL 158

Query: 201 KQ 206
           KQ
Sbjct: 159 KQ 160


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
 Frame = +3

Query: 9   EQLQKEFGVQLANIEKEMKSREK---EAEERLRNADAENKTLTKKLEQQTSKSSELA--- 170
           E+L+K+   +LA   K ++  EK   +AEE L+ ++ E  TLT ++E  T   ++L    
Sbjct: 95  ERLKKD-SQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESLTQDITDLRQQN 153

Query: 171 GVLIKFEERVKQRDKRLEEAAAHE 242
             L++  + +  + K+ E  A  E
Sbjct: 154 ASLVEENQLLSTQSKQWERRARDE 177


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 12  QLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQ-QTSKSSELAGVLIKF 188
           QL++E  V+L    + + S+  +AE +L + + ENK+L   +++ Q + SS+        
Sbjct: 368 QLEEEM-VELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSK-------- 418

Query: 189 EERVKQRDKRLEEA 230
           ++ VKQ   +LEEA
Sbjct: 419 DKMVKQVSSQLEEA 432



 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 6   KEQLQKEFGVQLANIEKEMKSRE---KEAEERLRNADAENKTLTKKLEQQTSKSSELAGV 176
           +E+L K   +QL   E+   S +   K+  E  +  +  ++T+TK+L+  +SK  +L   
Sbjct: 587 QEKLAKSV-MQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLE 645

Query: 177 LIKFEER 197
              FE++
Sbjct: 646 RANFEQK 652


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
 Frame = +3

Query: 3   QKEQLQKEFGVQLANIEKEMKSREK-----EAEERLRNADAENKTLTKKLEQQTSK---S 158
           QKE++ K+   +LAN+E  +  ++K     EA  ++R  D  +  L K L    SK   S
Sbjct: 380 QKEKVYKDKLDELANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTYLSKELAS 439

Query: 159 SELAGVLIKFEERVKQRDKRLEE 227
           +E A  L+K ++ VK      +E
Sbjct: 440 TEKAFRLVK-QQTVKSSHSHYQE 461


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 33  VQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRD 212
           ++L N  K++K    EAE +L+  D +  T   ++        +L     +FE+R+   +
Sbjct: 60  LKLNNTIKQLKKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILE 119

Query: 213 KRLEE 227
           K  E+
Sbjct: 120 KEKED 124


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 23/63 (36%), Positives = 33/63 (52%)
 Frame = +3

Query: 72  EKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEAAAHETAL 251
           EK+A  R   ADA+     K++EQ+  K  E     IK  E+  +R+K  E+ AAH   +
Sbjct: 18  EKKAYNRSGLADAQRTPYEKRMEQK-RKLDE-----IKEREKELKREKE-EQRAAHAEKI 70

Query: 252 RAR 260
           R R
Sbjct: 71  RTR 73


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 17/86 (19%), Positives = 45/86 (52%)
 Frame = +3

Query: 3   QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLI 182
           ++++LQK+   +    +KE +  ++E E + R  + + +   K   ++  +  +L    I
Sbjct: 76  KEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERI 135

Query: 183 KFEERVKQRDKRLEEAAAHETALRAR 260
           + +E+ +++++R ++    E A R R
Sbjct: 136 RLQEQQRRKEERDQKLREKEEAQRLR 161



 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 51  EKEMKSREKEAEERLRNADAENK 119
           E++ K REKE  +RLR     NK
Sbjct: 146 ERDQKLREKEEAQRLRQEQILNK 168


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +3

Query: 51  EKEMKSREKEAEERLRNADAENKTLTKKLEQ-QTSKSSELAGVLIKFEERVKQRDKRLEE 227
           E+E K + KEA +RL+    E K L KK E+ + ++   L     K+ +++ +     ++
Sbjct: 712 ERERKEQAKEA-KRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYAKQMSRESAHADQ 770

Query: 228 AAAH 239
           A A+
Sbjct: 771 AIAN 774


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 9   EQLQKEFGVQLANIEKEMKS---REKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVL 179
           + L   F   L N   E K+   +EK+ E R    DA +  + K  ++++    +L    
Sbjct: 116 DYLNNSFLANLENSLAEFKALDVKEKKMENRRLVFDALSTKIQKAKKEESKLEEDLRNAR 175

Query: 180 IKFEERVKQRDKRL 221
            K+EE +++ + R+
Sbjct: 176 AKYEESLEEFEDRM 189


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 39  LANIEKEMKSR-EKEAEERLRNADAENKTLTKKLEQQTSKSSELA 170
           L    K  K++  K A +  +NA+ E K+  KK +++TSK+ + A
Sbjct: 528 LTKASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEA 572


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 9   EQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKF 188
           E+LQ+E     A IEK  K+   E +E        +KT   + +    K  E+ G+L  +
Sbjct: 22  EELQREADEAAAEIEKMQKTSLDERKE------LSSKTKEFRKQPDEVKLGEMKGLLKLY 75

Query: 189 EERVKQRDKRLEEAAA 236
           +  +    KR + A A
Sbjct: 76  QSGIDSLTKRAKSAEA 91


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 51  EKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEEA 230
           + E    E+E +E L+N        +    Q    S+++  +  K +ER  ++  +  EA
Sbjct: 37  DDEEDEDEEENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEA 96

Query: 231 AAHETALRA 257
           AA E +L +
Sbjct: 97  AAKEESLES 105


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/80 (21%), Positives = 43/80 (53%)
 Frame = +3

Query: 3   QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLI 182
           ++EQ +K+  ++    E++ K +E+E + + +  +A+ + + +  EQ+  +  E    ++
Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAR--EQRLREEEEKR--IL 702

Query: 183 KFEERVKQRDKRLEEAAAHE 242
           +  +R ++ DK  EE    E
Sbjct: 703 EERKRREKLDKEEEERRRRE 722


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 33  VQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRD 212
           V++A  E+    REKEA ER+   + +N  +    +  T   S   G +    E +    
Sbjct: 18  VEMAEFERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIKSRKEGNMKVTAEEIGLET 77

Query: 213 KRLEE 227
           +  +E
Sbjct: 78  ENFDE 82


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/85 (18%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +3

Query: 6   KEQLQKEFGVQLANIEKEMKSRE-KEAEERLRNADAENKTL---TKKLEQQTSKSSELAG 173
           ++Q+ +E   +++ +E+   ++  +E+ + +   D + + +    KKL+ + S+ +E   
Sbjct: 456 RQQMTREMEERVSEVERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIA 515

Query: 174 VLIKFEERVKQRDKRLEEAAAHETA 248
            L +  E + +  + LEE +  E++
Sbjct: 516 QLEQIIEELHEELRSLEEESIKESS 540


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 96  RNADAENKTLTKKLEQQTSKSS--ELAGVLIKFEE 194
           + AD EN    KK+++QT KSS  E    L K +E
Sbjct: 225 QTADLENLETDKKIDKQTFKSSLYENLSTLFKSDE 259


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 75  KEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFEERVKQRDK 215
           K      +   A + T     +QQT+ S+ L+ ++   + R K++DK
Sbjct: 399 KNLASSTKPTSASSSTKAPLTKQQTNPSTPLSSIMAGLKGREKEKDK 445


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 153  KSSELAGVLIKFEERVKQRDKRLEEAAAHETALRARSRPGT*PLSSWRRPCWSARTGCTR 332
            +SS    +L +FE+  +Q    L  +      LRARS     P+S W+    +   GC +
Sbjct: 1561 ESSATPHLLKQFEQACQQA---LSSSQRTRARLRARSAKQRFPVSQWKAKLEALTDGCIK 1617


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 213 CHAASRAPRTL*GRPPARCSYSFV-VPVSSSASCSLRQRFSISPRLPS 73
           C AA   P T   +PP +       +P  S+A  S  + F++ PRL S
Sbjct: 284 CSAAVDCPHTTIPKPPYQSDTDLTELPTKSTAQFS-DETFTVQPRLKS 330


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 42  ANIEKEMKSREKEAEERLRNADAEN-KTLTKKLEQQTSKSSELAGV 176
           A  E+E +  +++ EE+ R A  E+ K   KKL ++ +KSS+ A +
Sbjct: 640 AQKEEEERIAQQKREEKRRLAYEESLKRHAKKLHEKKTKSSQDATI 685


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 51   EKEMKSREKEAEERLRNADAENKTL-TKKLEQQTSKSSELAGVLIKFEERVKQRDKRLEE 227
            E+ M  +  ++E+ LR+   E     TK++ +    +SEL     +  ER+++R+  L++
Sbjct: 888  EEFMPGKNAKSEKSLRSVFQEQLMRETKRVRKLEKVNSELKLHCFELSERLREREHTLQQ 947


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 60  SLFLCWRVEPRIPSAIVPFA 1
           S  + WR  P IP A  P+A
Sbjct: 159 SFLMVWRTNPNIPPATSPYA 178


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  EMKSREKEAEERLRNADAENKTLTKK 134
           E+K ++KE EE LRN + E K   KK
Sbjct: 103 ELKLQKKEKEEELRNLE-EEKAKKKK 127


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 12  QLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSELAGVLIKFE 191
           +L  EF  ++A +EK   S  KEAE  L+    +   L     ++ +    +A +  + +
Sbjct: 767 RLANEFDARIAKLEKMPFSPAKEAE--LKKISVDLSKLVVAAVRKHAMKERIAKITKQVQ 824

Query: 192 ERVK 203
           E VK
Sbjct: 825 EHVK 828


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
 Frame = +3

Query: 57  EMKSREKEAEERLRNADAENKTLT---KKLEQQTSKSSELAGVLIKFEERVKQR----DK 215
           + K +EK  +E+++  +  NKTL+   ++++ Q  ++ + A +  +     KQ      K
Sbjct: 71  DSKDKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKK 130

Query: 216 RLEEA 230
           RLE++
Sbjct: 131 RLEKS 135


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 39  LANIEKEMKSREKEAEERLRNADAEN--KTLTKKLEQQTSKSSELAGVLIK 185
           + NIE+E ++ E   +E L + D EN  + +T++   +  K S+   V+ K
Sbjct: 273 IKNIEREEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNK 323


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 260  IEARDLTIKQLEKTVLERENRLYQVTTQLDEMKRVQEMVAKLMSKSTSANCATDVEQ 430
            + AR   + + EKT  E EN+L + + ++   K ++E   K  S++T  N    ++Q
Sbjct: 1593 LAARSELVAEKEKTKEELENQLNEKSQRI---KELEEQAQKNSSENTHDNIDDMIKQ 1646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,428
Number of Sequences: 5004
Number of extensions: 22537
Number of successful extensions: 158
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -