Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30940
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    28   1.6  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   2.7  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.6  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   4.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   6.3  
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po...    25   8.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 352 KDLIKNLGQVYDKIQREQQISPGDFPDIKKMQETLG 459
           K L+ NL +  DK++    + PG+    K M E LG
Sbjct: 165 KSLMDNLSESLDKLELANALGPGEILRRKDMLEQLG 200


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 295 IVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDIKKMQETL 456
           +V+E +K++ S   +  KKKD I+ L ++Y+ +  +  ++    P +K + ETL
Sbjct: 40  LVSEQQKKIESSTLEVQKKKDQIRELERIYE-MNPKSFLTLRRTPALKLLPETL 92


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +1

Query: 262 KRARLAKVHAYI--VNELRKEMPSMFGKDS--KKKDLIKNLGQVYDKIQREQQ 408
           + AR+A+    +  V E RKE   +  K+   KKK+ +K  G+   K Q+EQQ
Sbjct: 270 EEARIAEEEKRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQQ 322


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 104 TPEVA-RVYIGSFWDEPLRYDVNRRLFEDEEQDL 202
           TPE A + Y+G   +E L YD    + E+E+ DL
Sbjct: 44  TPEAANKDYVGQQEEEELLYDQPSYIEEEEDPDL 77


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 295 IVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQIS 414
           I+++   +  S F  +SK++DLI N+G++     +EQ  S
Sbjct: 779 ILSDYISDQKSKF--ESKQQDLIANIGKIVSNFLQEQNES 816


>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 641 NGETWSSTPSKAPPFIRGSLTMLMSSCGIISMSRAMSVASMWS 513
           NG+   +T S  PP  R     ++S C    +  A+ VA + S
Sbjct: 99  NGKALMATGSPLPPLTRNGKEYVISQCNNALLYPALGVACVLS 141


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 68  GALMWSLGKVLQTPEVARVYIGSFWDEPLRYDV 166
           G L+  LG +L TPEV+ V +  FW++  R+ +
Sbjct: 422 GWLLTFLGIIL-TPEVSAVTLCLFWNKMTRFSL 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,192
Number of Sequences: 5004
Number of extensions: 64919
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)