Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20921
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 136 1e-32
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 30 1.7
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 29 2.2
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 29 2.9
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.9
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 29 3.9
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 5.1
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 5.1
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 28 6.8
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78) 27 9.0
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 9.0
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 136 bits (329), Expect = 1e-32
Identities = 62/94 (65%), Positives = 77/94 (81%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARPGA 408
GK ++I+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++E+KV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98 IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/46 (54%), Positives = 27/46 (58%)
Frame = +2
Query: 119 QLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMRKA 256
Q LDEYPK F+VG DNVG VLMGKNTM+RKA
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKA 46
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 492 PYQNFKGTIEIINDVHILKPGDKVGA 569
P + +GTIEIINDVH++K +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +2
Query: 251 KASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQSS 430
KA +TWT + +RN T ++ L +P L N + Q +PV + +C+++
Sbjct: 93 KARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRAN 150
Query: 431 FPPTTPASVQRKPLSSKLFP 490
S ++ SS L P
Sbjct: 151 DKLVESQSKRKSARSSNLIP 170
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -1
Query: 380 LCSNSLSRTSTRSPRVNT----KPTLPLMCGNSFSRAGLLSR 267
+C+ S +ST + R+ T KP +CG SFS++G LSR
Sbjct: 459 VCARGFSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 572 RSSNLVTGLQDVYIVDDFNSTLEI 501
R NLVT L DVYI ++ S L+I
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDI 318
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +2
Query: 356 SVTNCWSTKSRLQLVPVPLPHCQSSFPPTTPASVQRKP------LSSKLFPSLPKFQG 511
S +N S++ ++ P P FPP P V +KP S+L P LP G
Sbjct: 860 SRSNSTSSQQSIESAPGSPPTGADDFPPPPPPPVMKKPSRGGSLKESRLHPPLPSIHG 917
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -1
Query: 599 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVF 462
V++ EK GF +L+ L D+Y+ + + + +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 VPKMFHRGCR*RGLATDAADPYLAT-XLQYRAHGKKHYDAQSIK 261
VPKMFH RG+ T+A P + T L+ R G++ +A ++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNAMRVE 3899
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 486 KSLEERGFLWTEAGVVGGNDD*QWG 412
K+LEERG L+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPA 340
A ++ WT P C H ++ A C PA
Sbjct: 16 AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
+ +K HLDN P L K LP + G + + + GDL
Sbjct: 174 KELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 275 TIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQSSFP----PT 442
T+ P + CC+ +A A+ +P + + T +T++ + P P C P P+
Sbjct: 624 TLCPQK-CCNKGKAAAAAAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPS 682
Query: 443 TPA 451
PA
Sbjct: 683 CPA 685
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASV 457
PVP PH ++S PT P SV
Sbjct: 16 PVPRPHARASASPTHPTSV 34
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 440 WAGMTTDNGAMAPGRAGAWTLCSNSL 363
W+ T D PGRA AW+L S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 245 MRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQ 424
++ S+ + + I PS TS A+T + S N + L+ +P P P
Sbjct: 1181 IKSISRNSSSEICPSCRALETSSLIEFFLLSAKTIVSSCLNTLLVRP-LETIPAPTPTTP 1239
Query: 425 SSFPPTTPAS--VQRKPLSSKLFPS 493
+S P TPAS + R P+ K P+
Sbjct: 1240 TS--PATPASGPLTRTPILLKKTPT 1262
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 211 LQYRAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKV 384
++ R+HG + + +N LEK+L G + T VE +K +E K+
Sbjct: 25 MELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKI 82
>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 178 TDAADPYLATXLQYRAHGKKH-YDAQSIKDHLDNNPAL 288
T A DP +T YR KK ++ S+++H DN P L
Sbjct: 164 TSANDPQTSTTF-YRDEKKKEPHEDNSVRNHADNLPTL 200
>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
Length = 230
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 604 EMFNMLRRVASEAPTLSPGFKMCTSLMISIVPLKFW 497
E + LRRV +E+ T P CTSLM +I +K W
Sbjct: 93 ETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 263 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 367
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,321,770
Number of Sequences: 59808
Number of extensions: 471853
Number of successful extensions: 1445
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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