Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20921
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 101 5e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 101 5e-22
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 99 1e-21
At3g50610.1 68416.m05534 hypothetical protein 33 0.20
At1g58220.1 68414.m06612 myb family transcription factor contain... 33 0.20
At3g09000.1 68416.m01053 proline-rich family protein 30 1.4
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 1.8
At5g13260.1 68418.m01523 expressed protein 29 2.4
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 4.2
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 4.2
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.2
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.2
At5g04470.1 68418.m00445 expressed protein 28 5.6
At4g23810.1 68417.m03423 WRKY family transcription factor AR411 ... 28 5.6
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 28 5.6
At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein ... 27 7.4
At5g02590.1 68418.m00194 chloroplast lumen common family protein... 27 9.7
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 27 9.7
At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,... 27 9.7
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 9.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 101 bits (241), Expect = 5e-22
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ ++KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVG VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SEA LL L I P
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRP 184
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 101 bits (241), Expect = 5e-22
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ ++KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVG VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SEA LL L I P
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRP 184
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 99 bits (238), Expect = 1e-21
Identities = 48/96 (50%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK +S++ H D N A LLP ++GNVG +FT+GDL EV +++ ++KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/59 (42%), Positives = 32/59 (54%)
Frame = +2
Query: 80 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMRKA 256
KA K Y K+ QLL+EY + +V ADNVG VLMGKNTMM+++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 65
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SEA LL L I P
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRP 185
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 220 RAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLEHKVQAPA 396
+ + + H+ A D + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 397 RPGAIAPLSVVIPAHNTGLGPEK 465
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 32.7 bits (71), Expect = 0.20
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = -1
Query: 554 TGLQDVYIVDDFNSTLEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLC 375
TGLQ N L + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 374 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 273
+LSR +T P ++ + GNS SRA L+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.9 bits (64), Expect = 1.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +2
Query: 239 TMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPV---P 409
T S+ T SR+ TSRATL + ++ T S+ S P P
Sbjct: 168 TPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGSARSATPTRSNP 227
Query: 410 LPHCQSSFPPTT-PASVQRKPLSSKLFPSL 496
P SS P + PA+ R+P S+ PS+
Sbjct: 228 RPSSASSKKPVSRPATPTRRP-STPTGPSI 256
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 274 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 372
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 224 ARYWSXVARYGSAASVASPRYRH 156
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 425 TDNGAMAPGRAGAWTLCSNSLSRTSTRSPRVNTKPTLP 312
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 284 PSRNCCHTSRATLASCSPAETSLRSVTNCWSTKS 385
P R HT+R SC ETS +VT+ + K+
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKT 66
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 335 PAETSLRSVTNCWSTKSRLQLVPVP-LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQG 511
P+ T S + T P P P C PP+ P++ S PS P G
Sbjct: 76 PSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGG 135
Query: 512 YY 517
YY
Sbjct: 136 YY 137
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 335 PAETSLRSVTNCWSTKSRLQLVPVP-LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQG 511
P+ T S + T P P P C PP+ P++ S PS P G
Sbjct: 76 PSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGG 135
Query: 512 YY 517
YY
Sbjct: 136 YY 137
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 407 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 508
P P Q PP+TP+S+ + KL SL K++
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYE 84
>At4g23810.1 68417.m03423 WRKY family transcription factor AR411 -
Arabidopsis thaliana (thale cress), PID:g1669603
Length = 324
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 371 WSTKSRLQLVPVP---LPHCQSSFPPTTPASVQRKPLSSK 481
WS+ +QL+P P +P P +PAS+ P S +
Sbjct: 73 WSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEE 112
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 434 PPTTPA--SVQRKPLSSKLFPSLPKFQGYY*NHQRCTHL 544
P T+PA S R P SS L PS+P+ + + +RC+++
Sbjct: 22 PVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYV 60
>At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein
(FLA1) identical to
gi|13377776||AAK20857|13377775|gb|AF333970
Length = 424
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 430 IPAHNTGLGPEKTSFFQALSIPTKISRVLLKSS 528
+P + P+K +F L++PT S +LKS+
Sbjct: 235 LPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSN 267
>At5g02590.1 68418.m00194 chloroplast lumen common family protein
various predicted proteins, Arabidopsis thaliana
Length = 326
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 415 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISRVLLKSSTMYTS*SPVTRLELLKPP 582
P S VI A + P K SF + + + LL S++++ S PVT L+ PP
Sbjct: 38 PPSRVIRASSFSSNP-KPSFLKTTCVTLTTAAALL-SASLHLSTKPVTAATLVSPP 91
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 374 STKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP 499
S S VP P P +S PP TP+ P S PSLP
Sbjct: 109 SPPSLTPFVPHPTPK-KSPSPPPTPSLPPPAPKKSPSTPSLP 149
>At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Lupinus
luteus GI:4704824, Asclepias syriaca GI:1762436, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 391
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 575 FRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVFSG 456
F + V +VY DD+ LE LVG R K E +G
Sbjct: 304 FEHFSAVAQRLEVYTADDYADILEFLVGRWRLEKLEGLTG 343
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 441 VGGNDD*QWGNGTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 295
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,422
Number of Sequences: 28952
Number of extensions: 327291
Number of successful extensions: 1078
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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