Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20918
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   0.44 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   3.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 479 HRVRYGHPPHSKIREE---YPDRIMNTYSVVPSPKV 577
           H  RYGH P+  + EE    PD I++ +     PK+
Sbjct: 305 HLRRYGHTPNVVLDEEGNPCPDIIIDVHGTRRGPKI 340


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 94   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 216
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 639  QTKPTASTTRLYTTSAS 689
            QTK T STT   TT+ S
Sbjct: 1184 QTKTTTSTTTRPTTTVS 1200


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 437 LPTGLPTYTFPRWRHRVRYGHPP-HSKIREEY 529
           L TGL T   P+W++R +   P  H  I +E+
Sbjct: 111 LGTGLLTSAGPKWQNRRKILTPAFHFNILQEF 142


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 466 PSVAAPGPVWAPSSF 510
           PS+  PGP   P+ F
Sbjct: 155 PSIIDPGPALPPAGF 169


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 466 PSVAAPGPVWAPSSF 510
           PS+  PGP   P+ F
Sbjct: 155 PSIIDPGPALPPTGF 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,826
Number of Sequences: 336
Number of extensions: 3405
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)