Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20916
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_58937| Best HMM Match : Phytochelatin (HMM E-Value=5.6e-37)         30   2.3  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   28   9.4  
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   9.4  

>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 94  WWYQAPGSRAIPETTISTSTLSYKTTGSCSVIL 192
           W+Y   GSR IP  T +T  +SY T+    V++
Sbjct: 566 WYYHHVGSRRIPHWTTTTLPISYVTSADLYVMV 598


>SB_58937| Best HMM Match : Phytochelatin (HMM E-Value=5.6e-37)
          Length = 259

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 195 CVMDRGPCTKDGKTFKRALPRHCRQRVR 278
           C +D+ P TKD KT K  +   CR  VR
Sbjct: 230 CRLDKTPKTKDSKTAKHQIHGKCRNDVR 257


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 105 LIPPPSAPTRKTANSSCCRLC-CNQKESMRKTSEVG 1
           L+PPP    + + + S C +C  + +E +R +SE+G
Sbjct: 6   LVPPPRTKNQISVDFSKCIICQASSEEKLRCSSEIG 41


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 585 IFKFSQSFVY*LVFCFHT--IYLFFINVDTIKIRVIIYVFHRIRIW 716
           IF F+  FV+ +VF F    +++FF++V  +    ++YVF  + ++
Sbjct: 714 IFVFNAFFVF-VVFAFFVFLVFVFFVSVVFVFFVFVVYVFFALVVF 758


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 248 SSEALPTACARCSNKQKAAFRTLLLAIRARSEPSFLELLDKYDPSRS 388
           SSE  PT+  R S    A     + A+  +   S L +++KYDPS +
Sbjct: 384 SSEVAPTSTCRTS-VGVAVLDGFMYAVGGQDGVSCLNIVEKYDPSEN 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,511,762
Number of Sequences: 59808
Number of extensions: 478369
Number of successful extensions: 1307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)