Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20915
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.9  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.6  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 NHIMDLCIECQANQASAIVKNAQLL 277
           N  + +  +C  ++AS +VKNAQ L
Sbjct: 250 NCTLIIMCDCVRSEASKVVKNAQKL 274


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 374 WNSHSLLSSGQTC 336
           WN H LL++ Q C
Sbjct: 348 WNPHKLLTAPQQC 360


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 391 FNDHTFGTPILYCLVDKLVESSTNGKYSGNGMHDYK 284
           F  H     I +  V    +S+ NG+   N +H YK
Sbjct: 118 FGAHWMKESISFAKVKLTNKSNGNGQIMLNSLHKYK 153


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 211 YVISANSTVVDNNIPS 164
           YVI  N+ V+  NIPS
Sbjct: 133 YVIRGNTAVLKCNIPS 148


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 596 FLFIIIGVYYFYARLL 549
           F+FI++ ++Y  A L+
Sbjct: 245 FIFIVVSIFYMSAYLI 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,845
Number of Sequences: 336
Number of extensions: 3879
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)