Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q01AN8 Cluster: LvsC-like; n=3; Ostreococcus|Rep: LvsC-...    33   10.0 
UniRef50_Q8IAX3 Cluster: Putative uncharacterized protein PF08_0...    33   10.0 

>UniRef50_Q01AN8 Cluster: LvsC-like; n=3; Ostreococcus|Rep:
           LvsC-like - Ostreococcus tauri
          Length = 2966

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = +3

Query: 39  IELNCFQ*IYERIINVNTKFSDITWATKEAYKHNAKRAILESVRVHRGNASAGTSSSQIQ 218
           + +N  Q I   I+NV   F D +WA +   +  A   +LE +RV +  A+     S+  
Sbjct: 214 VMMNALQRIISSIVNVIACFVDDSWALRSFNESGALLGVLEVLRVEKIVATRSLGDSRFI 273

Query: 219 PLTSQD*EELSILIPLLHAKDVA 287
            +  Q     S+ I  +  KDVA
Sbjct: 274 AIDIQC--AASVCISRVMDKDVA 294


>UniRef50_Q8IAX3 Cluster: Putative uncharacterized protein PF08_0078;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PF08_0078 - Plasmodium falciparum (isolate 3D7)
          Length = 1419

 Score = 32.7 bits (71), Expect = 10.0
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = -2

Query: 752  KVFMLNN*TLIWHRSSVNRPKKNYQSLFPKQRLLMLYVRKVEQLAD*IPHKVVL*LIN-L 576
            K+F +++ T I  +S   + +  + SLF K+  L+L + ++    D     ++L  +N +
Sbjct: 1164 KIFFIDSNTSIKDKSGGEKVRILFLSLFLKKSNLLL-LDEINNNLDIYLKNLLLNFLNYI 1222

Query: 575  YN*CGVIAGHLFYILRNLLGIYK 507
            Y    ++  H FYI++NL  I+K
Sbjct: 1223 YQGSYILTTHDFYIIKNLNNIHK 1245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,409,431
Number of Sequences: 1657284
Number of extensions: 13023771
Number of successful extensions: 24822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24815
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)