Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   6.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 710 SSVNRPKKNYQSLFPKQRLLMLYVR 636
           +S  RPK   QSL P Q  L  Y+R
Sbjct: 246 ASFGRPKMTPQSLLPSQTGLSPYLR 270


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 149 PLGVVLVCFFSCPSNIRKFRIYVYYTFIYLLKTI 48
           P+ +  VC+F    N   FR Y+    + L+  +
Sbjct: 506 PVTLTSVCYFMIGLNSHGFRFYIACGIMILVANV 539


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 733  TKR*FGTEVVLTGLKKITNH 674
            TK    +E +L GLKK TN+
Sbjct: 1154 TKITAASETILHGLKKYTNY 1173


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -2

Query: 149 PLGVVLVCFFSCPSNIRKFRIYVYYTFIYLLKTI 48
           P+ +  VC+F    N + FR Y+    + L+  +
Sbjct: 506 PVILTSVCYFMIGLNSQGFRFYIACGIMILVANV 539


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,652
Number of Sequences: 336
Number of extensions: 3779
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)