Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20913
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16030.1 68415.m01838 expressed protein                             29   2.3  
At2g18610.1 68415.m02167 hypothetical protein                          28   6.9  

>At2g16030.1 68415.m01838 expressed protein
          Length = 231

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 595 KKHSEYIKSDCVHCVPRSARGHLPLPPRSATVW 497
           K H+ + +S C      S R HLPLP ++A +W
Sbjct: 43  KPHTHFPRSTC----DSSPRQHLPLPKKNARIW 71


>At2g18610.1 68415.m02167 hypothetical protein
          Length = 86

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = -3

Query: 537 GVICRSHRGLRRSGDGLVTV*RRSSDGLATVWRRSSDGLAARWPSV 400
           GV CR H G R    GL    +   DG      R  D  A   PSV
Sbjct: 31  GVACRDHSGFRLEKLGLFCWWKLQKDGCGQKLNRRKDHRAFPLPSV 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,972
Number of Sequences: 28952
Number of extensions: 266353
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)