Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20912
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10) 30 1.7
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 29 3.0
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42) 28 6.9
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1) 28 6.9
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 28 6.9
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 28 6.9
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 28 9.1
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_539| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6) 28 9.1
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 28 9.1
>SB_13838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 505 DIKAKVPTSQEPREAVP**LDASQPSCRSAETETRTQAR--NTKPGSPKTNEPTSQREGL 678
D K PT+Q+P P L A+ P+ T+ R + P T +PT+Q+
Sbjct: 3 DPTTKQPTTQQPHSQRPNNLKANDPTTLQPTTQQPNSQRPNDLTANDPTTKQPTTQQPYS 62
Query: 679 RDQ 687
R Q
Sbjct: 63 RSQ 65
>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
Length = 507
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -1
Query: 567 VKSLGYCFTRFLAGWN 520
V+ GYCFTR L GWN
Sbjct: 482 VEDTGYCFTRSLHGWN 497
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 485 QRKSLLEILKQKFQPAKNR-VKQYPNDLTHHN---PHAEAPKPKPELKLEIRNPDPLRRT 652
Q +L E LK K P ++ + ++P T H E KP L D L
Sbjct: 3897 QEINLFEALKPKESPTHDQAMTRHPKSPTVHQLDKASKEEFPSKPSTSLSTDLADTLELN 3956
Query: 653 NQPLNVKDLETRTSQSDKKS 712
P V L + TSQ+ KK+
Sbjct: 3957 TTPATVDTLSSITSQTKKKT 3976
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 610 TQARNTKPGSPKTNEPTSQREGLRDQNLTVG*KVKAQP 723
T+ R + PG+P + PT LR TV K +QP
Sbjct: 297 TEPRTSTPGTPAKSTPTQSGPPLRRSTRTVNKKPSSQP 334
>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
Length = 1172
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 572 HNPHAEAPKPKPELKLEIRNPDP-LRRTNQPLNVKDLETRTSQSDKK 709
H+P ++ P+P+L+ ++ P+P L L+ + + R +SD +
Sbjct: 610 HDPESDMRDPEPDLESDLHGPEPDLYDPGPDLHDPESDLRDPESDSR 656
>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
Length = 678
Score = 28.3 bits (60), Expect = 6.9
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -2
Query: 443 TADDQSSLSFTVYASQIVGWRGRLRTSHVPQIQ*ITLAFLNAKAAIVVMVCFIADNIARS 264
T+ + SSLS + A QI GW + V + + ++ I V + D++A+S
Sbjct: 50 TSMNTSSLSPSTDAVQIRGWLTSVSRVSVSSFEEVKATPMDTGIFISVSSNSVNDDVAKS 109
Query: 263 A-SVVSGEQYSSS*HIS*PHLMPSRVI*AEAT 171
+ S S Q+S+ ++ HL PS + EAT
Sbjct: 110 SISFSSQAQFSAKVTLTNSHL-PSVIKPTEAT 140
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 527 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDK 706
P +RV P D T H P P+ +PE++ + PD +R + ++V +R+S D
Sbjct: 695 PPPSRVIPLPRDATTHTPE---PQQEPEVQSHM-EPDHVRYMLERMSVNYPTSRSSFVDP 750
Query: 707 KS 712
++
Sbjct: 751 RT 752
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/74 (22%), Positives = 29/74 (39%)
Frame = +1
Query: 103 VHGALEITEREMSGFVCVLILAGVASAQITLDGIRCGQLICQLDEYCSPETTDALRAMLS 282
+ L + SGF+CVL +A +A ++ G+ L L ET +
Sbjct: 804 IKNPLRCLRKPSSGFLCVLAVADLAVGLLSSVGVAVNCLDAFLTANLEEETLQKYSLVAG 863
Query: 283 AIKHTITTIAAFAL 324
+ +T + AL
Sbjct: 864 VLTYTFQVLVVVAL 877
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 523 PTSQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPTSQ 666
P S EP S S E ETR +T+P SP EP ++
Sbjct: 850 PVSPEPENQYNHYYQTRPVSPPSKEPETRYYQEDTRPASPPAKEPETR 897
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +1
Query: 511 KAKVPTSQ--EPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPTSQREGLRD 684
K + P Q PR+A + QP + R +R TK P+ + + R +
Sbjct: 629 KTRKPQDQAARPRQASRKTKTSKQPDQDKQDARPRQASRKTKTSKPQDQDKQAARPSCKT 688
Query: 685 QNLTVG*KVKAQPRQRR 735
+ K A+P+Q R
Sbjct: 689 KTSNPQDKQAARPKQAR 705
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 632 PDPLRRTNQPLNVKDLETRTSQSDKKSRRNHAKDD 736
P P RR QP K+ +T++ + DKK ++ D+
Sbjct: 66 PKPKRRKAQPSAPKEKQTKSRKRDKKKDKSALTDE 100
>SB_539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 371 RTSHVPQIQ*ITLAFLNAKAAIVVMVCFIADNIARSASVVSGEQY 237
+T +P + ++L +L+ +++++VCF+ S V SG+ Y
Sbjct: 75 KTDKIPDV--LSLQYLSVCTSLLLLVCFLNVGRVSSTEVKSGQLY 117
>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
Length = 1953
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 575 NPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKKSRRNHAK 730
NP K K E K ++ P + T+QP N ++ ++ DK S N +
Sbjct: 45 NPQYVVAKTKHEAKSTMQPPRSVASTSQPSNGIVTRSKHTRKDKSSTMNQGQ 96
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +2
Query: 524 QPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSD 703
QP V + E P+PK E+K+E P R QP ++++ Q
Sbjct: 617 QPQPKEVVKIEQPQPEEEVRIEQPQPKEEVKIEQPQPKEEVRIEQPQPEEEVKIEQPQPK 676
Query: 704 KKSR 715
++ R
Sbjct: 677 EEVR 680
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,417,151
Number of Sequences: 59808
Number of extensions: 454427
Number of successful extensions: 1440
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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