Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20911
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    25   0.73 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.0  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 657 FSQRKYQYFLVITKSTSIYRIHYIGILFNDI 565
           F   K  YF + T S    R+H+ G +   I
Sbjct: 129 FVNEKQSYFHIATTSNEFIRVHHSGSITRSI 159


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 353 QLLLCGSSEEFRGH 394
           + ++CG S+ F GH
Sbjct: 324 KFVICGESDIFNGH 337


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 462 KQMEQIVKLKCSIMLRLMEPRQACPRNSSEDPHS 361
           K  E  + L  + +  +M P    P+N   D HS
Sbjct: 627 KVKENEITLLVATVRHVMAPSTCQPQNPDNDVHS 660


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -1

Query: 602 IAYII*VYCLMT*FLMLTKITLAYFKSIFFSCVILTLCVHNARESNQN 459
           + Y++ +Y L +   M+TK+ +  F        I  + +  A  S  N
Sbjct: 268 VVYVLILYILESLLYMVTKLVVVTFLKFIKKIQIFGIMITKACMSASN 315


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 469 PIKTDGTNCKAKVLN 425
           P  T+GTNC+   +N
Sbjct: 404 PSGTNGTNCEIDTIN 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,541
Number of Sequences: 336
Number of extensions: 2715
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)