Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20910
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 32 0.46
At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa... 31 0.61
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 30 1.4
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 30 1.4
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot... 30 1.9
At4g21540.1 68417.m03112 diacylglycerol kinase family protein co... 29 3.2
At5g55960.1 68418.m06979 expressed protein 29 4.3
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 29 4.3
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida... 29 4.3
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 29 4.3
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p... 28 5.7
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 5.7
At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3) ... 28 5.7
At1g61080.1 68414.m06877 proline-rich family protein 28 5.7
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 7.5
At3g09670.1 68416.m01146 PWWP domain-containing protein 28 7.5
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 28 7.5
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 27 9.9
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1... 27 9.9
At2g32850.2 68415.m04025 protein kinase family protein contains ... 27 9.9
At2g32850.1 68415.m04024 protein kinase family protein contains ... 27 9.9
At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM do... 27 9.9
At1g49010.1 68414.m05495 myb family transcription factor contain... 27 9.9
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 480 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 340
+GT + +G+ QQ+ ++ Q PNL S++ + V + + + FLL
Sbjct: 35 YGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81
>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 145
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 311 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICC 451
+C C+P KN D ++ G+ ++ V FG+++ +E EICC
Sbjct: 20 TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -3
Query: 480 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 340
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FL+
Sbjct: 37 YGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVNVFNNLDEPFLI 83
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 480 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 340
+GT S +G+ Q++ ++ Q PNL S++ + V + + FLL
Sbjct: 34 YGTASPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLL 80
>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 554
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 480 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 340
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FLL
Sbjct: 36 YGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLL 82
>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
contains INTERPRO domain, IPR001206, DAG-kinase
catalytic domain
Length = 1240
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = -2
Query: 415 AEPDIQHSPPRHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVSRFPVP 236
A+ DI+ R G + ++ LV + A +L + + LRR N + P P
Sbjct: 532 ADIDIESEKFRWMGSARIDFYVCLVDKFDNYCIAVVKLLALQRIICLRRYNGRILFLPAP 591
Query: 235 ASPAWGAFRRCS 200
+G CS
Sbjct: 592 GFEGYGQPASCS 603
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 649 SGLLLQRTIRSKRPAEPQ-PRGTRRTEPPYPPSGDGHS 539
+ L Q RS +PQ P + + PP PSGDG S
Sbjct: 16 TNLAWQEMFRSASSRKPQDPPSSSSSSPPRKPSGDGSS 53
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 507 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHP 385
S S G G G+G+GS G++ + ++ + + +S T P
Sbjct: 198 SISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPP 238
>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
family protein similar to laccase [Populus balsamifera
subsp. trichocarpa][GI:3805960]
Length = 569
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 485 QPEPLEVEGCGYRNPMGVGVTITGGWVRRLSSASSPGLWL 604
Q +E Y N +GV V GGW A++PGLWL
Sbjct: 494 QTAKFNLEDPPYLNTIGVPV---GGWAAIRFVANNPGLWL 530
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 510 PSTSRGSGCGFGTGSVMGLVQQIS-TLSWQSSS-PNLTSSTPHPVTLALLTS 361
P +S G GF +G+ L + + SW SS P SSTP P + TS
Sbjct: 568 PVSSSGFLSGFSSGTQSSLASMAAPSFSWPGSSQPQQLSSTPAPFPASSPTS 619
>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
putative similar to laccase [Pinus taeda][GI:13661207]
Length = 557
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 476 PKPQPEPLEVEGCGYRNPMGVGVTITGGWVRRLSSASSPGLW 601
PK P + RN +GV TGGW A +PG+W
Sbjct: 479 PKKDPAKFNLVDPPERNTVGVP---TGGWAAIRFRADNPGVW 517
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +3
Query: 174 HDLRPCLASEHLRNAPHAGEAGTGNLETSSLSLRRATACLRIRTGNLANASPTICVTRTM 353
H+ RP ++S + AG A TG+L +S RA+ GN + S ++ T+
Sbjct: 251 HEHRPSISSYLKTDMGSAGPAWTGSLSSSVPMNDRASTVGDFENGNSLSGSGSL---PTL 307
Query: 354 KGWTLITPA*RGGECWMSGSAKKTAKRAW 440
+G + + +G E + + KK + W
Sbjct: 308 QG--VAVSSDKGAEANTTSTKKKVSSDDW 334
>At2g24060.1 68415.m02874 translation initiation factor 3 (IF-3)
family protein similar to SP|P33319 Translation
initiation factor IF-3 {Proteus vulgaris}; contains Pfam
profiles PF00707: Translation initiation factor IF-3,
C-terminal domain, PF05198: Translation initiation
factor IF-3, N-terminal domain
Length = 312
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 458 PITEPVPKPQPEPLEVE 508
P EP P+P+PEPL+++
Sbjct: 295 PEPEPEPEPEPEPLQID 311
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -2
Query: 637 LQRTIRSKRPAEPQPRGTRRTEPPYPPSGDGHSDPHGVP 521
L TI + P P PR PP PP G + P P
Sbjct: 516 LPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPP 554
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 450 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 358
+ +++LSWQ+S P + + + +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340
>At3g09670.1 68416.m01146 PWWP domain-containing protein
Length = 726
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 507 STSRGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPS 352
STS+ + G+G + + LS + SP+ T S+PH ++ TS S
Sbjct: 576 STSKKAAKSNGSGKSLQEKPKAEALSAREISPSTTLSSPHAASVTKTTSGKS 627
>At2g34680.1 68415.m04260 leucine-rich repeat family protein contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
identical to cDNA hypothetical protein (AIR9) mRNA,
partial cds GI:3695020
Length = 1661
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 419 EDCQESVEICCTNPITEPVPKPQPEPLEVEGCGYRNPMGVGVTI 550
+D ES+E+ T P+ E + P + +G NPMG+ + I
Sbjct: 1079 DDVGESIELIYT-PVREDGIEGSPRSIRTDGIAPANPMGLELLI 1121
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 535 GRSDHHRRVGTEAQFGEFPWVVALLDALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLR 714
GR D R A P + L L S++ VG+ V ++GAH + N R
Sbjct: 150 GRRDA-RTASQAAANSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCTNFR 208
Query: 715 AR 720
AR
Sbjct: 209 AR 210
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 446 CCTNPITEPVPKPQPE 493
CC P+ + VPKP P+
Sbjct: 60 CCLRPVLQHVPKPDPD 75
>At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 422
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 175 TTLDPALLLNIFGTPPTPAKPARGTWK 255
T +P L + PTP +P +G WK
Sbjct: 251 TKWEPEHFLKVADCSPTPTRPLQGLWK 277
>At2g32850.2 68415.m04025 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 670
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 619 SKRPAEPQPRGTRRTEPPYPPSGDGHSDPHGVPVAA 512
SK +P P RR+ PP PPS G SD G P+ A
Sbjct: 323 SKSATKPSP-APRRSPPPPPPS-SGESDSGG-PLGA 355
>At2g32850.1 68415.m04024 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 650
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 619 SKRPAEPQPRGTRRTEPPYPPSGDGHSDPHGVPVAA 512
SK +P P RR+ PP PPS G SD G P+ A
Sbjct: 323 SKSATKPSP-APRRSPPPPPPS-SGESDSGG-PLGA 355
>At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 844
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 416 EEDCQESVEICCTNPITEPVPKPQPEPLEVE 508
EED Q S++ +P+TE P P P PL VE
Sbjct: 65 EEDGQNSLDD--QSPLTELQPLPLPPPLPVE 93
>At1g49010.1 68414.m05495 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 314
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 652 VSGLLLQRTIRSKRPAEPQPRGTRRTEPPYPPSGDGHSDPHGVPV 518
V+G Q + RPA+PQP+ + + +PP+ G G PV
Sbjct: 208 VTGGGQQPQVVKHRPAQPQPQPQPQPQQHHPPTMAGLGMYGGAPV 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,033
Number of Sequences: 28952
Number of extensions: 392119
Number of successful extensions: 1592
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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