Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20909
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16004| Best HMM Match : efhand (HMM E-Value=1.7) 81 9e-16
SB_38215| Best HMM Match : efhand (HMM E-Value=0.81) 52 5e-07
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24) 42 5e-04
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39) 36 0.042
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39) 36 0.042
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.056
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26) 35 0.056
SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15) 35 0.074
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 34 0.098
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05) 33 0.30
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 33 0.30
SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11) 32 0.39
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26) 32 0.52
SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21) 32 0.52
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 30 1.6
SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21) 30 1.6
SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58) 29 3.7
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16) 28 6.4
SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45) 28 6.4
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_16004| Best HMM Match : efhand (HMM E-Value=1.7)
Length = 201
Score = 81.0 bits (191), Expect = 9e-16
Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Frame = +1
Query: 13 FTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHN-----KNAKLPMAKVLTYPELK 177
FTEE+L+DY+D T+FT+ ++L H++++AL P + + L M +L PELK
Sbjct: 8 FTEEQLEDYQDCTFFTRADILRIHKRYRALHPVLIPDDYKELETQPLLKMRHLLKLPELK 67
Query: 178 VNPFKDRICKVFSSSNDGDCTFEDFL 255
NPFK RIC+VFS + G TF+DFL
Sbjct: 68 ENPFKCRICQVFSVNGSGALTFDDFL 93
>SB_38215| Best HMM Match : efhand (HMM E-Value=0.81)
Length = 35
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 178 VNPFKDRICKVFSSSNDGDCTFEDFL 255
VNPF+DRICKVFSSS DG TFEDFL
Sbjct: 1 VNPFRDRICKVFSSSKDGSLTFEDFL 26
>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
Length = 176
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
++ +S FS K K + AFRI+D D D I +L +V++ + G LK ++++QQ+V
Sbjct: 97 IEGVSQFSVKGDKESKLKFAFRIYDMDNDGYISNGELFQVLKMMVGNNLK--ETQLQQIV 154
Query: 432 QNVXXXXXXXXXXXXSFAEF 491
F+EF
Sbjct: 155 DKTILNADKDGDGKICFSEF 174
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 112 KVGHNKNAKLPMAKVLTYPELKVNPFKDRICKVFSSSNDGDCTFEDFLT-*CQFSVR 279
K+ + + L + + ++ PEL+ NP R+ +F + +G+ F++F+ QFSV+
Sbjct: 50 KLDLDNSGSLSVEEFMSLPELQQNPLVQRVITIFDADGNGEVDFKEFIEGVSQFSVK 106
>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +3
Query: 306 HAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQ 434
+AF +FD D I S+LR++ LCG+E K+ + E+Q +++
Sbjct: 225 NAFHVFDSDDKGYIEASELRDL---LCGMEKKIPEDELQDMLR 264
>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 659
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
L MM+ + + AFR+FD DG+ I ++LR V + L KL+D E+ +++
Sbjct: 59 LTMMARKMKNTDSEEEIREAFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMI 115
Query: 432 Q 434
+
Sbjct: 116 R 116
>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
Length = 250
Score = 35.5 bits (78), Expect = 0.042
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
L MM+ + + AFR+FD DG+ I ++LR V + L KL+D E+ +++
Sbjct: 59 LTMMARKMKNTDSEEEIREAFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMI 115
Query: 432 Q 434
+
Sbjct: 116 R 116
>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 35.1 bits (77), Expect = 0.056
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
L MM+ + + AFR+FD DG+ I ++LR V + L KL+D E+ +++
Sbjct: 70 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVDEMI 126
Query: 432 Q 434
+
Sbjct: 127 R 127
>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
Length = 213
Score = 35.1 bits (77), Expect = 0.056
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
AFR+FD DG+ I ++LR V + L KL+D E+++++
Sbjct: 53 AFRVFDKDGNGFISAAELRHV---MTNLGEKLTDEEVEEMI 90
>SB_50692| Best HMM Match : efhand (HMM E-Value=1.5e-15)
Length = 150
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
+ R+FD DG MI +LR + L L KL+DSE+ L+Q +
Sbjct: 91 SLRVFDNDGSGMINEGELRHI---LTTLGEKLTDSEVDSLIQGL 131
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 34.3 bits (75), Expect = 0.098
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
L MM + + AFR+FD +GD I +LR V + L KLSD EI++++
Sbjct: 59 LAMMKKQMQHRDAEAEMREAFRVFDRNGDGSISEWELRSV---MASLGEKLSDDEIKEMM 115
Query: 432 Q 434
+
Sbjct: 116 R 116
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 300 AEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNV 440
A F +FD DG I +L EV+ + G SD E+QQ++Q V
Sbjct: 2 ASGGFSLFDKDGSGTISNEEL-EVVMKSLG--QNPSDEELQQMIQEV 45
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 10 QFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPELKVNPF 189
+ T+EE+ + T FT+ E+ FK P+ G +K +Y + F
Sbjct: 10 KLTDEEILELRKTTEFTEDELQKWFAAFKNNCPK--GKMSQSKFCEMYAKSYKTGDASIF 67
Query: 190 KDRICKVFSSSNDGDCTFEDFL 255
+ + F +NDG F +F+
Sbjct: 68 AGHVFRTFDKNNDGTIDFNEFI 89
>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
Length = 69
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 312 FRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
F++FD +G+ +IG ++LR + L L KLSD E+ L+
Sbjct: 11 FKVFDRNGNGLIGAAELRHL---LASLGDKLSDEEVDNLM 47
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 303 EHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQ 434
+ AF++FD +GD MI S+L+ V + L +L+D E+ ++++
Sbjct: 366 QDAFKVFDKNGDGMISSSELKLV---MSNLGERLTDDEVDEMIR 406
>SB_44628| Best HMM Match : efhand (HMM E-Value=2.8e-11)
Length = 205
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 297 KAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQNVXXXXXXXXXXXX 476
K + AFRI+D D D I +DL ++ + G + +SD + +
Sbjct: 130 KLKFAFRIYDIDSDGYISKTDLIAILHMMVG--VTISDEHLTGIADRAISDADTDGDKLI 187
Query: 477 SFAEFE 494
SFAE +
Sbjct: 188 SFAELK 193
>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
Length = 354
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 303 EHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQ 434
+ FR+FD D ++ IGV +++ V+ +L G + K D E++ ++Q
Sbjct: 293 QETFRVFDRDNNNSIGVEEVQRVL-KLLGQDFK--DYEVEAMLQ 333
>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
Length = 172
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQL 428
AFRIFD DG+ + + + R+ +Q KL+D E++QL
Sbjct: 43 AFRIFDDDGNRALNIDEFRKGMQ---DFGTKLTDDEVKQL 79
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 252 LDMMSVFSEMAPKAVKAEHAFRIFDFDGD-DMIGVSD--LREVIQRLCGLELKLSDSEIQ 422
+D++ F + P+AVKA + F ++G D+ +SD +REV + L + +D E +
Sbjct: 174 IDLIFGFKQRGPEAVKATNVFFHLTYEGSVDLDSISDTVMREVTRFLRLFSCRTTDQEFR 233
>SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21)
Length = 202
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 309 AFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLVQN 437
AFR+FD DG + SDLR V++ LE + + EI ++Q+
Sbjct: 128 AFRMFDRDGRGYVMSSDLRFVLRH---LEENIPEHEINDILQD 167
>SB_51948| Best HMM Match : Cation_efflux (HMM E-Value=0.58)
Length = 262
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 536 IRL*EISTNMQYYPCHQNAHNILISNSI--YILWLFYKSIIFIADLLSY 676
+R E ++ C+ +L+ N I Y++WL Y +++ +A +L+Y
Sbjct: 87 VRFNEYYDPEEHPACYFWGFQVLVFNGIACYVVWLIYHAMLILAAVLTY 135
>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
Length = 285
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 288 KAVKAEHAFRIFDFDGDDMIGVSDLREVIQRLCGLELKLSDSEIQQLV 431
K + AF+ D DGD I DL++ +Q C + LSD ++++++
Sbjct: 71 KTQEIRMAFKSMDKDGDGFITFGDLKKTMQE-C--DENLSDDDLKRMI 115
>SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
Length = 352
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 572 YPCHQNAHNILISNSIYILWLFYKSIIFIADLLSYLFGSCCIINW 706
Y C N N++++ + I WL + +I + ++ YL+ S W
Sbjct: 161 YLCRSNWPNVMLAIAYNIAWLLFLGVIPLG-IMGYLYSSIVKTLW 204
>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 210 HLTYPIFEWIHFKFWICE-HFGHR 142
HL + + HF FW+CE FGHR
Sbjct: 424 HLIVVYYNY-HFYFWLCEASFGHR 446
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,222,181
Number of Sequences: 59808
Number of extensions: 378238
Number of successful extensions: 1202
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -