Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20907
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)                   27   7.9  
SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_10761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 48  YIFLCAGQNLLERRREVSTTTTPIPFP 128
           Y+F  +  N L+R    +TT+T +PFP
Sbjct: 21  YLFAKSHNNNLKRHESRATTSTKVPFP 47


>SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)
          Length = 962

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 69  QNLLERRREVSTTTTPIPFPPCRADDIDCL 158
           Q + + +++V   T PIP  PC+A   DCL
Sbjct: 820 QEMQQAQQKVPMMTHPIPQLPCQAVASDCL 849


>SB_15789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 158 AAWFENILQPHGFRSLRNDARGPDLHKQCRHRVPE 262
           A W EN+L+  GF+         +    C+  VP+
Sbjct: 206 AGWHENVLKSSGFQRTPGKKEASNCKAACKEEVPD 240


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 87   RREVSTTTTPIPFPPCRADDID 152
            RR  S    P+P PPC  DD+D
Sbjct: 1894 RRHSSPPPPPVP-PPCETDDVD 1914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,569,147
Number of Sequences: 59808
Number of extensions: 432927
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)