Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20907
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    29   2.1  
At3g16750.1 68416.m02138 expressed protein ; expression supporte...    28   3.7  
At4g31020.2 68417.m04406 expressed protein                             28   4.9  
At4g31020.1 68417.m04405 expressed protein                             28   4.9  
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi...    27   6.5  
At1g75670.2 68414.m08791 expressed protein similar to DNA-depend...    27   6.5  
At1g75670.1 68414.m08790 expressed protein similar to DNA-depend...    27   6.5  
At1g62320.1 68414.m07032 early-responsive to dehydration protein...    27   6.5  
At1g30090.1 68414.m03678 kelch repeat-containing F-box family pr...    27   8.6  

>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 330 LSTSLVQLIPVTMTFLNKKDSCCSGTRWRHCLCKSGPRASFRND 199
           LS  L+ LI   ++F     +    TRWRH +C+     SFR D
Sbjct: 13  LSDFLLVLIISNLSFKEALSTSRLSTRWRH-ICRETRNISFRED 55


>At3g16750.1 68416.m02138 expressed protein ; expression supported
           by MPSS
          Length = 194

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 69  QNLLERRREVSTTTTPIPFP 128
           +N+L +R ++ T+T P+PFP
Sbjct: 32  RNILGKREDLLTSTVPVPFP 51


>At4g31020.2 68417.m04406 expressed protein
          Length = 294

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 538 LVPTKCNTRYFFFSNIPRIRYVSLNTLDVHG 446
           L P K    +  F NI +IR+V+   L +HG
Sbjct: 179 LYPVKMTLWFDIFKNIDKIRHVNSQVLVIHG 209


>At4g31020.1 68417.m04405 expressed protein
          Length = 294

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 538 LVPTKCNTRYFFFSNIPRIRYVSLNTLDVHG 446
           L P K    +  F NI +IR+V+   L +HG
Sbjct: 179 LYPVKMTLWFDIFKNIDKIRHVNSQVLVIHG 209


>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
           sapiens, PID:d1034112
          Length = 434

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 526 KCNTRYFFFSNIPR--IRYVSLNTLDVHGHMCE*GFVYIRFRHD*ISGYMQVATKEYSIF 353
           KC+  YFFFS+     ++ +    L+ H    E GF+ +          +    + Y +F
Sbjct: 296 KCDKHYFFFSSSRSRLMKVLKSQLLEAHSSFLEEGFMLLM-----DESLIDDLRRMYRLF 350

Query: 352 NSVFMESFIDQ 320
           + V  E +ID+
Sbjct: 351 SMVDSEDYIDR 361


>At1g75670.2 68414.m08791 expressed protein similar to DNA-dependent
           RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43)
           (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
          Length = 196

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 281 IRRIVAARVRDGDTVYVNRVHGRHSV 204
           IR     RVRDG+  +V+R H RH++
Sbjct: 116 IREEFKYRVRDGEGSFVSRSHKRHAL 141


>At1g75670.1 68414.m08790 expressed protein similar to DNA-dependent
           RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43)
           (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
          Length = 196

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 281 IRRIVAARVRDGDTVYVNRVHGRHSV 204
           IR     RVRDG+  +V+R H RH++
Sbjct: 116 IREEFKYRVRDGEGSFVSRSHKRHAL 141


>At1g62320.1 68414.m07032 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 769

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 423 YISAFAMTRSPVTCKSLLKSTPFLIPFSWNLLSTSLVQ 310
           +I   A  +S  + + + KS PFL P   N L  SL+Q
Sbjct: 386 FIIPIAFVQSLASIEGIEKSAPFLSPIVKNKLMKSLIQ 423


>At1g30090.1 68414.m03678 kelch repeat-containing F-box family
           protein similar to SP|O95198 Kelch-like protein 2
           (Actin-binding protein Mayven) {Homo sapiens}; contains
           Pfam profiles PF01344: Kelch motif, PF00646: F-box
           domain
          Length = 398

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
 Frame = +2

Query: 146 HRLPAAWFENILQPHGFRSLRNDARGPDLHKQCRHRVPEQQLSF-LLRKVIVTGISWT-- 316
           H +PA    + + PHGFRS+     G      C   V +      L+ K  +    WT  
Sbjct: 133 HEIPAMPCRDKVCPHGFRSVSMPREGTMF--VCGGMVSDSDCPLDLVLKYDMVKNHWTVT 190

Query: 317 -KLVDKR-FHENGIKNGVLFSSDLHVTGDLVMAKADIYEPL 433
            K++  R F  +G+ +G+++++  +      +  A++  PL
Sbjct: 191 NKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPL 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,460,142
Number of Sequences: 28952
Number of extensions: 296667
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)