Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20904
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   8.5  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   8.5  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 378 NASCLAEIYEIIYWIFFKILSLYKL 304
           N+  L ++Y  + W F +IL +  L
Sbjct: 260 NSDNLTDVYFTLQWAFLQILEILAL 284


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 386 KKTTRPVWLKFMRLYIGY 333
           K+  RPV L  M+LY+G+
Sbjct: 240 KQFFRPVELSLMQLYLGH 257


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 497 SEMCPIT*SGSHDT 538
           S+ CPIT SGS D+
Sbjct: 374 SQSCPITSSGSTDS 387


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 435 YDNNLDINLFVSKILIKKNNASCLAE 358
           YDN +D+N  +    + KN  +CL +
Sbjct: 26  YDN-IDLNQILKSDRLLKNYVNCLLD 50


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 435 YDNNLDINLFVSKILIKKNNASCLAE 358
           YDN +D+N  +    + KN  +CL +
Sbjct: 26  YDN-IDLNQILKSDRLLKNYVNCLLD 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,531
Number of Sequences: 336
Number of extensions: 2566
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)