Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20903
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F695 Cluster: Glycosyl-phosphatidyl-inositol-anchored...    89   6e-17
UniRef50_Q3Y125 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q4SHU7 Cluster: Chromosome 5 SCAF14581, whole genome sh...    35   1.5  
UniRef50_A4HCQ4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q0RB73 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_A6C9X9 Cluster: Probable extracellular nuclease; n=1; P...    33   4.4  
UniRef50_Q5YVV5 Cluster: Putative amidase; n=1; Nocardia farcini...    33   5.9  

>UniRef50_Q2F695 Cluster: Glycosyl-phosphatidyl-inositol-anchored
           protein; n=1; Bombyx mori|Rep:
           Glycosyl-phosphatidyl-inositol-anchored protein - Bombyx
           mori (Silk moth)
          Length = 615

 Score = 89.4 bits (212), Expect = 6e-17
 Identities = 45/84 (53%), Positives = 45/84 (53%)
 Frame = +2

Query: 2   KEDDCRKDGPSPELENGGDRKGDSQSXXXXXXXXXXXXXXXXXXXXAFPXXXXXXXXXXX 181
           KEDDCRKDGPSPELENGGDRKGDSQS                    AFP           
Sbjct: 459 KEDDCRKDGPSPELENGGDRKGDSQSRYRRFGRGGRGAPNGHRGRGAFPNRQGGDGYRGR 518

Query: 182 XXXXXXXXSNREGFQNRQYDGYQN 253
                   SNREGFQNRQYDGYQN
Sbjct: 519 QGGDYQNRSNREGFQNRQYDGYQN 542



 Score = 59.3 bits (137), Expect = 8e-08
 Identities = 31/69 (44%), Positives = 31/69 (44%)
 Frame = +3

Query: 264 RTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQH 443
           RTGGDGYYGNGDVSEGAHHA                                      QH
Sbjct: 547 RTGGDGYYGNGDVSEGAHHAENGRERYGEGNGFQGGYKGRGRGAPRGATRGASRPPRAQH 606

Query: 444 YTRRSDNAE 470
           YTRRSDNAE
Sbjct: 607 YTRRSDNAE 615


>UniRef50_Q3Y125 Cluster: Putative uncharacterized protein; n=1;
           Enterococcus faecium DO|Rep: Putative uncharacterized
           protein - Enterococcus faecium DO
          Length = 260

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -2

Query: 229 VLKAFPVRSVLVITTLSAPIAVTALTIRESASAAMT 122
           VLK FPV  +L++ TLS P+A+T +T   S S  ++
Sbjct: 151 VLKVFPVLLLLILATLSVPVALTFITRSTSVSLLLS 186


>UniRef50_Q4SHU7 Cluster: Chromosome 5 SCAF14581, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 5
           SCAF14581, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1679

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -2

Query: 301 TSPLP*-YPSPPVRSHA--ILVAVILSVLKAFPVRSVLVITTLSAPIAVTALTIRESASA 131
           +SPLP   P+PP  +H+   L + +L + +      V+  TT  AP+A+     ++SAS 
Sbjct: 25  SSPLPPAQPTPPQNNHSNLFLSSALLGLPEPHHPNGVIQSTTQDAPLALITKPRKDSASQ 84

Query: 130 AMTVRCXXXXXXXXXXXTLGVSLTVAT 50
             + +C           + G S T AT
Sbjct: 85  GKSPQCDADAGSMPVNLSTGASRTQAT 111


>UniRef50_A4HCQ4 Cluster: Putative uncharacterized protein; n=1;
            Leishmania braziliensis|Rep: Putative uncharacterized
            protein - Leishmania braziliensis
          Length = 1938

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 72   PRVDTDVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKVVITKTDR-TGKAFKTDNMTAT 248
            P +D   S  AA AH  V+  +A+ L +  V     D++ +   DR TG+A  +D+ TAT
Sbjct: 1451 PPLDFIPSATAAVAHPYVVMDDAVWLDMSPVLQSLNDRIGLKFCDRGTGEALASDSETAT 1510

Query: 249  KIACERTGGDGYYGNGDVSEGA 314
             I    T  +   G G  ++GA
Sbjct: 1511 SITQLPTMNNRGGGVGPPADGA 1532


>UniRef50_Q0RB73 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 483

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 274 PPVRSHAILVAVILSVLKAFPVRSVLVITTLSAPIAVTALTIRESASAAM 125
           PP  + A+++  +   L A P R   V+ TL A +AVTA   R    AA+
Sbjct: 58  PPGAAVALVLPELAHTLSAVPYRVAFVVLTLLADLAVTAALARRDRGAAL 107


>UniRef50_A6C9X9 Cluster: Probable extracellular nuclease; n=1;
           Planctomyces maris DSM 8797|Rep: Probable extracellular
           nuclease - Planctomyces maris DSM 8797
          Length = 1076

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +3

Query: 51  VATVRETPRVDTDVSVAAAEAHRTV-IAAEALSLIVKAVTAIGADKVVITKTDRTGKAFK 227
           +A    T   DT +S  AA A +T+ +  E L L    +T +GAD++ I+  + T + FK
Sbjct: 583 IALANTTSGADT-ISFDAALAGQTITLTDELLILDDLTITGLGADQLTISGDNNT-RIFK 640

Query: 228 TDN-MTATKIACERTGGDGYYGNGDVS 305
            D+  + TKI  E  G     GN + S
Sbjct: 641 IDDGFSVTKITVEIEGLTLTNGNSNES 667


>UniRef50_Q5YVV5 Cluster: Putative amidase; n=1; Nocardia
           farcinica|Rep: Putative amidase - Nocardia farcinica
          Length = 411

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 87  DVSVAAAEAHRTVIAAEALSLIVKAVTAIGADKVVITKTD--RTGKAFKTDNMTATKIAC 260
           +V   A EAHR V+A EA     +A     AD++     D  RTG A      TA + A 
Sbjct: 260 EVVAPAVEAHRMVMAYEAAR--ERAAELARADELSRPLADLLRTGAAISDSEYTAARRAI 317

Query: 261 ERTGG 275
           ERT G
Sbjct: 318 ERTRG 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,937,473
Number of Sequences: 1657284
Number of extensions: 8977509
Number of successful extensions: 25642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25631
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)