Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20898
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.56 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    24   1.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 240 RSKSSQRCRDNSLSSTGTPWTTSNGPHNMN 151
           RS   Q+ R+N  S++   W  +NG ++ N
Sbjct: 357 RSSDEQQWRNNQPSTSNNRWHNNNGNNSNN 386


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 457 ESRQSNITFRTPEVNPGGATNINVTINKR*PSLGVRRRRTSPSPWTERGTSGAVARR 287
           +S ++   FRT  +     TN     N R  S   + +   PS W +R  +   A+R
Sbjct: 95  DSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTTTQNKNDDPSYWEKRRKNNEAAKR 151


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 445 SNITFRTPEVNPGGATNINVTINKR*PSLGVRRRRTSPS 329
           SNI     ++ P    N +V  +   P  G +  RTSPS
Sbjct: 126 SNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPS 164


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 445 SNITFRTPEVNPGGATNINVTINKR*PSLGVRRRRTSPS 329
           SNI     ++ P    N +V  +   P  G +  RTSPS
Sbjct: 126 SNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPS 164


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 445 SNITFRTPEVNPGGATNINVTINKR*PSLGVRRRRTSPS 329
           SNI     ++ P    N +V  +   P  G +  RTSPS
Sbjct: 126 SNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPS 164


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
          protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 31 PMRNKSTRNAPAGGEAQP 84
          P    + ++APAGGE +P
Sbjct: 18 PQPYMNAQDAPAGGENEP 35


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 142 SFGIHVMGAVGRGPRCAGGREGVVPT 219
           SFG+H  G+       AGG    VP+
Sbjct: 253 SFGLHATGSAPSPTAGAGGLPPQVPS 278


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,593
Number of Sequences: 336
Number of extensions: 3615
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)