Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20898
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2) 32 0.37
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 0.64
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 1.1
SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 30 1.5
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 30 1.5
SB_44695| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 30 1.5
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 30 2.0
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 30 2.0
SB_35565| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 2.0
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 29 2.6
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13) 29 2.6
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 2.6
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 29 2.6
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 29 2.6
SB_35861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26) 29 3.4
SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 3.4
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22) 29 3.4
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 29 3.4
SB_863| Best HMM Match : C2 (HMM E-Value=5.4e-36) 29 3.4
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 29 4.5
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16) 28 7.9
SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 28 7.9
>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1560
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = -1
Query: 318 NEEHQVQLLEDVQLYPRSDQTGKTVARSKSSQRCRDNSLSSTGTPWTTSNG 166
NE H VQ+ + +YP TGK ++ SK SQR + SL TTSNG
Sbjct: 317 NEFHGVQV-QTACVYPEMSATGKALSASKKSQRTQPQSLDDI---LTTSNG 363
>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
Length = 1716
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 291 EDVQ-LYPRSDQTGKTVARSKSSQRCRDNSLSSTGTPWTTSNGPHNM 154
ED Q +Y D TG++ S S+R +SLSS+ T W S+ HN+
Sbjct: 768 EDYQGIYSAYDMTGRSPYGSSISRRYSQSSLSSSNTSWHHSSS-HNI 813
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT-*IPKLTLPDSTIQHAPP 105
TKP +P P+P S + T P+ P P PTAP T +P+ LP + H PP
Sbjct: 174 TKPPKP---PAP-STIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGS-PHIPP 222
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPPAG 60
AP P + G+ P PPA +G P P P + APP P +G+ A PP G
Sbjct: 304 APPPPPSRGSAPPPPPARMGTAPPPPPP-SRSSQRPPPPSRGAPP-PPSMGM--APPPVG 359
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -2
Query: 242 LAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPPA 63
+AP P P PP GP P P P P S++ + PP P G +PP
Sbjct: 353 MAPPPVGGAAPPPPPPPPVGGPPPPPP----PIEGRPPSSLGNPPPPPP---PGRGAPPP 405
Query: 62 G 60
G
Sbjct: 406 G 406
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTT-PSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG 81
P R P P + +GT P PP+ RP P P P S PPVG
Sbjct: 309 PSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPP---PPSMGMAPPPVGGAAPPP 365
Query: 80 *ASPPAG 60
PP G
Sbjct: 366 PPPPPVG 372
>SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGP-RPTAPIT*IPKLTLPDSTIQHAPPVGP 96
AP P S T+ P HL P PTAP P+ T T H P P
Sbjct: 30 APRPTSPQCTSTHLTPVHLDPPHPTAPRPTSPQCTSTHLTPVHLDPPHP 78
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = -2
Query: 359 RSTEASHIALAVDRTRNIRCSCSKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLG 180
RST+ H ++ + S KT + + TK + P PSP + TT + P
Sbjct: 118 RSTDHVHSRAQEEQIPTL--STLKTTATSTSTTKYIPP--PPSPPT---TTTTTTPETTA 170
Query: 179 PRPTAPIT*IPKLTLPDST 123
PR T P T P+ T P +T
Sbjct: 171 PRTTTPETTTPETTTPRTT 189
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLT--LPDSTIQHAPPVGPLLGVG*ASPP 66
P P + P+ PP P P I +P LT LP T++H P PL + PP
Sbjct: 628 PRPTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLPPPTVRH-PQATPLPRLATHPPP 685
>SB_44695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*I-PKLTLPDSTIQHAPPVGPLLGV 84
PV+P + P V P +P + PRP P + P + + + PV P++G+
Sbjct: 249 PVQPVVGMEPRPVVPYAPVQPVVGMEPRPVVPYAPVQPVVGMEPRPVVPYAPVQPVVGM 307
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPS-PASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVG 99
T LT P P+LA + P V T+P P T P+ + TLP TI
Sbjct: 33 TSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTTPLLMVTTSTLPPPTIPFLATTT 92
Query: 98 PLLGV 84
PLL V
Sbjct: 93 PLLMV 97
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPS-PASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVG 99
T L P P+LA + P V T+P PP T P+ + LP TI
Sbjct: 121 TSPLPSPTIPFLATTAPLLMVTTSPLPPPTIPFLATTTPLLMVTTSPLPPPTIPFLATTT 180
Query: 98 PLLGV 84
PLL V
Sbjct: 181 PLLMV 185
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPS-PASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVG 99
T L P P+LA + P V T+P PP T P+ + LP TI
Sbjct: 143 TSPLPPPTIPFLATTTPLLMVTTSPLPPPTIPFLATTTPLLMVTTSPLPPPTIPFLATTT 202
Query: 98 PLLGV 84
PLL V
Sbjct: 203 PLLMV 207
>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 1841
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 278 CTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
C +V PV+P + P V P +P + PRP P
Sbjct: 1456 CPVVPYAPVQPMVGMEPLPVVPYAPVQPVVGMEPRPVVP 1494
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 251 RPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP-PVGP 96
RP L PSP A PSR HL P P P + +P ++P S H P P+ P
Sbjct: 81 RPTLHPSPLPATSIPPSR-YIHL-PFPLHP-SPLPATSIPPSRYIHPPSPLHP 130
>SB_35565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.9 bits (64), Expect = 2.0
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = -1
Query: 327 RGPNEEHQVQLLEDVQLYPRSDQTGKTVARSKSSQRCRDNSLSSTGTPWTTSNGPHNMNS 148
+GP E+H +L + ++ + + RS+S +R R+N + TG ++ H S
Sbjct: 98 KGPTEDHPYPVLATLTEKEQNQRATRAKTRSRSRKR-RENPIEETG-----ASKKHQQES 151
Query: 147 KTDFA*FNDTARSSCRTS--FRSGLSFSPGRSVSSALIAHRQREFRGSSVL 1
F DT S TS F SGL PG S +S + R +G+ +
Sbjct: 152 SC-FPVPGDTEEQSEDTSVLFESGL---PGPSRASLESQDQGRTDKGTQTV 198
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
T ++ + V P P P TPS+ P+ P PT+P T P P + PP P
Sbjct: 99 TPMVAQSVAP--TPPPPPRAPETPSQAPSP-PPPPTSPATRAPPPPPPIAPATGGPPPPP 155
Query: 95 LLGVG*ASPP 66
+ PP
Sbjct: 156 PIAPATGGPP 165
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 108
P P + +P+ A TPS PA PR P+T +P ++ I++AP
Sbjct: 287 PALPTIPQAPSGAPAKTPSVAPAAPSPR---PLTGLPGRPSWNTVIRYAP 333
>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
Length = 1012
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 201 RGSCPYSAGWTWSE--PRSYRFGQNEGTAERLRATAPDVPRSVH 326
R SCP S+ W W E P R ++ AE + + VPR ++
Sbjct: 621 RESCPKSSAWDWDELLPSDLRLEWSKWEAEMVALKSFVVPRYIY 664
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -2
Query: 299 SCSKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 123
S KT S + TK + P P TT + P PR T P T P+ T P +T
Sbjct: 1750 STLKTTSTSTSTTKYIPP---PHSPPTTTTTTTTTPETTAPRTTTPETTTPETTTPRTT 1805
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 108
P P + +P+ A TPS PA PR P+T +P ++ I++AP
Sbjct: 291 PALPTIPQAPSGAPAKTPSVAPAAPSPR---PLTGLPGRPSWNTVIRYAP 337
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 108
P P + +P+ A TPS PA PR P+T +P ++ I++AP
Sbjct: 967 PALPTIPQAPSGAPAKTPSVAPAAPSPR---PLTGLPGRPSWNTVIRYAP 1013
>SB_35861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 109 GACCIVESGKVSFGIHVMGAVGRGPRCAG-GREGVVPTALAGLGAS 243
G C + G V G+ V+GAVG G G G GV G G +
Sbjct: 16 GGCGVAVVGAVGCGVAVVGAVGCGVAVVGAGGCGVAVVGAVGCGVA 61
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +1
Query: 109 GACCIVESGKVSFGIHVMGAVGRGPRCAGGREGVVPTALAGLGASHGLTGLVRTRVQLNV 288
G C + G V G+ V+GAVG G G G P + G L G+ + V
Sbjct: 46 GGCGVAVVGAVGCGVAVVGAVGCGVAVVGA-GGCCPDVVGAEGTCVVLDGVAAAACGIAV 104
Query: 289 FEQLHLMFLVRST 327
E + RS+
Sbjct: 105 EEIFRITLNDRSS 117
>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
Length = 671
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVG-TTPSRPPAHLGPRP 171
S T SC V T+ P AP+ SAV T+P + GP P
Sbjct: 400 SMTSSCVNVTTEQTAPSAAPTGLSAVNKTSPHKVSVQWGPVP 441
>SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 29.1 bits (62), Expect = 3.4
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = -1
Query: 327 RGPNEEHQVQLLEDVQLYPRSDQTGKTVARSKSSQRCRDNSLSSTGTPWTTSNGPHNMNS 148
+GP E+H +L + ++ + + RS+S +R R+N + TG ++ H S
Sbjct: 98 KGPTEDHPYPVLATLTEKEQNQRATRAKTRSRSRKR-RENPIEETG-----ASKKHQQES 151
Query: 147 KTDFA*FNDTARSSCRTS--FRSGLSFSPGRSVSS 49
F DT S TS F SGL PG S +S
Sbjct: 152 SC-FPVPGDTEEQSEDTSVLFESGL---PGPSRAS 182
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*I-PKLTLPDSTIQHAPP 105
T P +P PA+ TTP+ PT P T P T P PP
Sbjct: 73 TTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPP 126
>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
Length = 472
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 422 RSQSRWRDQYQCYYQ*TLAFSRSTEASHIALAVDRTRNIRC 300
R+ W D Y+ YY + ++++T I V+ R +RC
Sbjct: 284 RAVEVWMDDYKRYYYAAVPYAKNTPYGDIEERVELRRKLRC 324
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 248 PWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
P PS V TPS P P + P++ P TLP T H PPV
Sbjct: 491 PVFTPSHTPPV-FTPSHTPPVSTPSNSPPVS-TPSNTLPVFTPSHTPPV 537
>SB_863| Best HMM Match : C2 (HMM E-Value=5.4e-36)
Length = 454
Score = 29.1 bits (62), Expect = 3.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 186 VCRWTRGSCPYSAGWT 233
+C+W R P+ AGWT
Sbjct: 391 ICKWRRSDVPHPAGWT 406
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLL 90
P P P+P+S S PP PTAP + P + H PP P L
Sbjct: 202 PTAPSYPPTPSSYPPIAASYPPTAPSYNPTAPSYPPTPSSYPPTQPSH-PPTAPFL 256
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -2
Query: 374 TLAFSRSTEASHIALAVDRTRNIRCSCSKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRP 195
TL S +T S L + R ++ T P +P+ P+P+S T PS P
Sbjct: 142 TLLSSDTTLFSDSTLLIPRHNLFILRQHPSYPPTQPFYPPTQPFYPPTPSSYPPTQPSYP 201
Query: 194 PAHLGPRPT 168
P PT
Sbjct: 202 PTAPSYPPT 210
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLL 90
P +P P+P+S + T P PP P PT P + P + + PP P L
Sbjct: 511 PTQPSYPPTPSSYLPTQPYYPPPQPYP-PTQPSYPPTPSSYPPTQPSY-PPTAPFL 564
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -2
Query: 230 PASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPP 66
P + T P RPP + P+P+ T P LP ST + PPV L V PP
Sbjct: 1649 PVTPPTTDPPRPPVTVTPKPS---TDAP---LPASTSRPQPPVPTKLPVVLTIPP 1697
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 269 VLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IP-KLTLPDS 126
+ +P RP AP P + P P + PRP PI+ P + T P S
Sbjct: 61 ITPRPHRP-TAPRPHDPIAPRPRSPHGPVAPRPHRPISPRPHRPTTPPS 108
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPW-LAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQ 117
+KT + + T VRP AP+PA T+P+ P + + R AP IP P ++
Sbjct: 43 AKTIVSSCLATLRVRPLETAPAPAPTTPTSPATPASGVPIR--AP---IPLKETPSPALE 97
Query: 116 HAPPVGP 96
AP P
Sbjct: 98 SAPAAMP 104
>SB_15480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
++P PW AP P + V + + PP PR +P
Sbjct: 139 SEPYPPWTAPEPYTPVDSAKAGPPMD-SPRARSP 171
>SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +2
Query: 23 SLCRCAIRALETLLPGEKLSPLLKEVLQEERAVSLNQAKSVLEFMLWGPLDVVQGVPVDE 202
++ C ++ T ++ +KEV Q ++ SL+ + V +F+ PL G P
Sbjct: 73 TIVNCYVQMCRTHAEQRPITDRVKEVKQPLQSESLSTRRLVKKFLACYPLFAPYGCP--- 129
Query: 203 RELSLQRWLDLERATV 250
++L WL+ + V
Sbjct: 130 KKLITDNWLEFKNQLV 145
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/59 (40%), Positives = 27/59 (45%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLG 87
TKP P + P+ PSRPP G RPT P K T P T PPV P +G
Sbjct: 784 TKPATPRVPPN-------IPSRPP---GARPTPPPPPPGKPTKP--TKPSLPPVPPGIG 830
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 314 RNIRCSCSKTFSCTLVLTKPVRPWLAP-SPASAVGTTPSRPPAHLGPRPTAPIT*IPKLT 138
+ I SC T + T P P SPA+ P+R P L PTA + P
Sbjct: 628 KTIVSSCLATLLVRPLETIPAPAPTKPISPATPASGPPTRTPIPLKETPTAALESAP-AA 686
Query: 137 LPDST 123
+PD+T
Sbjct: 687 MPDAT 691
>SB_45653| Best HMM Match : zf-GRF (HMM E-Value=5.3e-16)
Length = 470
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 16 SKLPLPMRNKSTRNAPAGGEAQPTPKRGPT 105
S+ L N + + AP+ G A P PKR T
Sbjct: 303 SETELSASNTTKKRAPSSGSAVPNPKRAKT 332
>SB_43824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 373 R*PSLGVRRRRTSPSPWTERGTSGAVARRRSAVPS 269
R PS G RRR SPS ++G++ RRS+ S
Sbjct: 65 RIPSSGGRRRSPSPSGIPRTSSTGSLGSRRSSQSS 99
>SB_18199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 109 GACCIVESGKVSFGIHVMGAVGRGPRCAGGREGVVPTALAGLGASHGLTGL 261
G C + G V G+ V+GAVG G G G P + G L G+
Sbjct: 188 GGCGVAVVGAVGCGVAVVGAVGCGVAVVGA-GGCCPDVVGAEGTCVVLDGV 237
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLP 132
PSP+ + TTP+ P + P +A T +P T P
Sbjct: 90 PSPSHSTPTTPTPPLSQPSPASSATPTRVPDSTSP 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,292,902
Number of Sequences: 59808
Number of extensions: 476181
Number of successful extensions: 2105
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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