Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20898
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 38 0.006
At2g18470.1 68415.m02151 protein kinase family protein contains ... 36 0.032
At1g10620.1 68414.m01204 protein kinase family protein contains ... 35 0.043
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 34 0.098
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 34 0.098
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 34 0.098
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 33 0.17
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 33 0.17
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 33 0.17
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 33 0.23
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 33 0.23
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 32 0.30
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.30
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 31 0.52
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 31 0.52
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 31 0.52
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 31 0.52
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 31 0.69
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.92
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 30 1.2
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 30 1.6
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 30 1.6
At1g77960.1 68414.m09085 hypothetical protein 30 1.6
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 29 2.8
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr... 29 2.8
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 29 3.7
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 29 3.7
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 29 3.7
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t... 29 3.7
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t... 29 3.7
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ... 29 3.7
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 3.7
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica... 28 4.9
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 28 4.9
At5g25550.1 68418.m03040 leucine-rich repeat family protein / ex... 28 4.9
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 4.9
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 4.9
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 6.5
At4g35490.1 68417.m05043 ribosomal protein L11 family protein se... 28 6.5
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 28 6.5
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 6.5
At3g14590.1 68416.m01847 C2 domain-containing protein low simila... 28 6.5
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 6.5
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 6.5
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 27 8.5
At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ... 27 8.5
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 8.5
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 27 8.5
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 27 8.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 27 8.5
At1g75400.1 68414.m08759 expressed protein 27 8.5
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTI---QHAPPVGPLLG 87
P P PSP S T+P PP+ P P++PI P + P + I Q++PP+ P
Sbjct: 527 PSPPITVPSPPSTP-TSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPP 585
Query: 86 VG*ASPPA 63
SPP+
Sbjct: 586 FTGPSPPS 593
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -2
Query: 239 APSPASAVGTTPSRPP--AHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPP 66
+P P V P PP AH P P+ P+ P + ++PP P++ PP
Sbjct: 757 SPPPPPTVHYNPPPPPSPAHYSPPPSPPVY-YYNSPPPPPAVHYSPPPPPVIHHSQPPPP 815
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 35.5 bits (78), Expect = 0.032
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP--PVGPLLGV 84
P +PSP S +T S PPA P PT P PDST AP P P
Sbjct: 10 PTNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDSTSPPAPQAPNPPNSSN 69
Query: 83 G*ASPPA 63
SPP+
Sbjct: 70 NSPSPPS 76
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPP 105
+P PA+A P++PP + P PT P + P +T P S Q PP
Sbjct: 59 SPPPATAAQPPPNQPP-NTTPPPTPPSSPPPSITPPPSPPQPQPP 102
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 33.9 bits (74), Expect = 0.098
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPA-HLGPRPTAPIT*IPKLTLPDSTI 120
P P P P+S P+ PP+ H P PTAP+ + LP S+I
Sbjct: 1138 PQPPSSPPPPSSPPQLAPAPPPSDHCLPPPTAPLAPAQSIALPPSSI 1184
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 272 LVLTKPVRPWLAPSPASAVGTTPSRPPAHLGP-RPTAPIT*IPKLTLPDSTIQH 114
LV +P + P+P + P++PP H+GP PT P T PK P + +H
Sbjct: 364 LVPVEPPQQVEPPTPTKPLA--PAKPPRHVGPLMPTKPPTMFPKPLAPAKSPRH 415
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 272 LVLTKPVRPWLAPSPASAVGTTPSRPPAHLG-PRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
L+ TKP P + P P + P++ P H+ P PT P T PK P +H P P
Sbjct: 394 LMPTKP--PTMFPKPLA-----PAKSPRHVELPMPTKPPTMFPKPLAPAKPPRHVEPPMP 446
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG* 78
P P +P P+ V + P P H P P+ + P + + P+ P++GV
Sbjct: 429 PSPPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVH---HSSPPPPSPEFEGPLPPVIGVSY 485
Query: 77 ASPPAGAF 54
ASPP F
Sbjct: 486 ASPPPPPF 493
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = -2
Query: 287 TFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP 108
+F C + KP P +A P +P PP P P+ P+ + P S ++P
Sbjct: 393 SFGCGRSVVKPSPPIVALPPPPP--PSPPLPPPVYSPPPSPPV-----FSPPPSPPVYSP 445
Query: 107 PVGPLLGVG*ASPP 66
P P + PP
Sbjct: 446 PPPPSIHYSSPPPP 459
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDS 126
P P AP P S G P PP GPRP P++ PK P S
Sbjct: 386 PRPPPPAPPPGSG-GPKPPPPPGPKGPRPPPPMSLGPKAPRPPS 428
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDS 126
P P AP P S G P PP GPRP P++ PK P S
Sbjct: 386 PRPPPPAPPPGSG-GPKPPPPPGPKGPRPPPPMSLGPKAPRPPS 428
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
AP PA + P+ P PR TAP P P S APPV
Sbjct: 23 APGPAPTISPLPATPTPSQSPRATAPAP-SPSANPPPSAPTTAPPV 67
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPP 105
P+P+ + T P P P+AP T P ++ P + APP
Sbjct: 37 PTPSQSPRATAPAPSPSANPPPSAPTT-APPVSQPPTESPPAPP 79
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/70 (32%), Positives = 28/70 (40%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
T+ P P P+P + + T S PP P P AP T + APP P
Sbjct: 702 TVTKVPPPPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPP 761
Query: 95 LLGVG*ASPP 66
L ASPP
Sbjct: 762 RLPTHSASPP 771
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 233 SPASAVGTTPSRPPAHLG-PRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*A-SPPAG 60
SP++ V + S P HLG P T P +LP + APP P + V + SPPAG
Sbjct: 588 SPSTVVTPSTSPPAGHLGSPSDTPSSVVSPSTSLPAGQL-GAPPATPSMVVSPSTSPPAG 646
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 32.3 bits (70), Expect = 0.30
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = -1
Query: 375 NVSLL*EYGGVAHRPRRGPNEEHQVQLLEDVQL--YP--RSDQTGKTVARSKSSQRCRDN 208
N++ + E G R RRG E V + ED+ + YP ++ G VA + SS
Sbjct: 489 NMASVAEMGSAEKRTRRGDAGEEDVDIGEDIPIEDYPSVEIERDGTAVAAAASSGSSSSG 548
Query: 207 SLSSTGTPWTTS-NGPHNMNSKTD 139
S SS+G ++S +G +S +D
Sbjct: 549 SSSSSGGSSSSSDSGSGGSSSGSD 572
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPPAG 60
+P PA V +P P H P P P+ + P + ++ P+ P++GV ASPP
Sbjct: 703 SPPPAPVVHHSPPPPMVHHSPPP--PVI---HQSPPPPSPEYEGPLPPVIGVSYASPPPP 757
Query: 59 AF 54
F
Sbjct: 758 PF 759
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG* 78
P+ P+L+P P ++P P + P P I P P I+++PP P + V
Sbjct: 584 PIYPYLSPPPPPTPVSSPPPTPVYSPPPPPPCIEPPP----PPPCIEYSPPPPPPV-VHY 638
Query: 77 ASPP 66
+SPP
Sbjct: 639 SSPP 642
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -2
Query: 260 KPVRPWLAPSPASAVGTTPSR---PPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
KP P P V P++ PP + P P PK+ +P I+H PPV
Sbjct: 297 KPCPPKKVDPPPVPVHKPPTKKPCPPKKVDPPPVPVHKPPPKIVIPPPKIEHPPPV 352
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 248 PWLAPSPASAVGTTPSRPPAH---LGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
P +P P TT PP+ + P P AP++ P LT P S + PV
Sbjct: 120 PEFSPPPPDLDTTTAPPPPSTDIPIPPPPPAPVSASPPLTPPSSVVTSPAPV 171
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = -2
Query: 281 SCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
S T + P P + P+P +TP+ PP P P T P D I PP
Sbjct: 93 SSTSISPNPPAPIVNPNPPPP--STPNPPPEFSPPPPDLDTTTAPPPPSTDIPIP-PPPP 149
Query: 101 GPLLGVG*ASPPA 63
P+ +PP+
Sbjct: 150 APVSASPPLTPPS 162
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSR-PPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPV 102
T + + PV+P +P + + + P + PP H P PT +P P + P T ++PP+
Sbjct: 261 TPIYSPPVKPPPVQTPPTPIYSPPVKPPPVHKPPTPTYSPPVKSPPVQKP-PTPTYSPPI 319
Query: 101 GP 96
P
Sbjct: 320 KP 321
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSR-PPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPV 102
T + + P++P P + + + P + PP H P PT +P P + P + I ++PP+
Sbjct: 193 TPIYSPPIKPPPVHKPPTPIYSPPIKPPPVHKPPTPTYSPPVKPPPVHKPPTPI-YSPPI 251
Query: 101 GP 96
P
Sbjct: 252 KP 253
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSR-PPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPV 102
T + + PV+P P + + + P + PP H P PT +P P + P T ++PPV
Sbjct: 429 TPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHKPPTPTYSPPIKPPPVKPPTPT--YSPPV 486
Query: 101 GP 96
P
Sbjct: 487 QP 488
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPVG 99
T + P++P P + + P +PP H P P +P P + P + I ++PP+
Sbjct: 160 TPTYSPPIKPPPVHKPPTPTYSPPIKPPVHKPPTPIYSPPIKPPPVHKPPTPI-YSPPIK 218
Query: 98 P 96
P
Sbjct: 219 P 219
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPVG 99
T + + PV+P P + + P +PP P PT +P P + P T ++PPV
Sbjct: 446 TPIYSPPVKPPPVHKPPTPTYSPPIKPPPVKPPTPTYSPPVQPPPVQKP-PTPTYSPPVK 504
Query: 98 P 96
P
Sbjct: 505 P 505
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSR-PPAHLGPRPT-APIT*IPKLTLPDSTIQHAPPV 102
T + + PV+P P + + + P + PP H P P +P P + P T ++PP+
Sbjct: 345 TPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHKPPTPIYSPPVKPPPIQKP-PTPTYSPPI 403
Query: 101 GP 96
P
Sbjct: 404 KP 405
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 31.5 bits (68), Expect = 0.52
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = -2
Query: 263 TKPVRPWLAP--SPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLL 90
T P P +AP SPA+ P PPA P++ P T P T PP
Sbjct: 80 TSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASPPPAPASP 139
Query: 89 GVG*ASPP 66
ASPP
Sbjct: 140 PPAPASPP 147
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
T T P AP +A T + PP P +P+T P +T T AP V P
Sbjct: 33 TSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVT---PTSPPAPKVAP 89
Query: 95 LLGVG*ASPP 66
++ A+PP
Sbjct: 90 VISP--ATPP 97
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = -2
Query: 272 LVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPL 93
L+ + + P+P + +P++PP P P+ T P + + +PP G
Sbjct: 14 LIASSAIAQAPGPAPTRSPLPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVSPPAGSP 73
Query: 92 LGVG*ASPPA 63
L ASPPA
Sbjct: 74 LPSS-ASPPA 82
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG* 78
P P +PSP S + + P PP H P P P + P + PP P V
Sbjct: 536 PQPPMPSPSPPSPIYSPP--PPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHS 593
Query: 77 ASPP 66
PP
Sbjct: 594 PPPP 597
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPV 102
P P S TTP PPA + P P IT P L+ P I PP+
Sbjct: 94 PPPLSPPQTTPPPPPA-ITPPPPPAIT--PPLSPPPPAITPPPPL 135
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRP---TAPIT*IPK-LTLPDSTIQHAPPVGP 96
T P P + P P A+ S PP + P P T P PK L P S Q PP P
Sbjct: 103 TPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPP 162
Query: 95 LL 90
+
Sbjct: 163 AI 164
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 254 VRPWLAPSPASAVGTTP--SRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGV 84
+ P L+P P + P + PPA L P+P P P+ T P P PL+G+
Sbjct: 118 ITPPLSPPPPAITPPPPLATTPPA-LPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGI 175
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -2
Query: 266 LTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLL 90
L+ P P SP V +P PP +L P P P+ L+ P + +PP P+L
Sbjct: 42 LSPPPPPVNISSPPPPVNLSPPPPPVNLSP-PPPPV----NLSPPPPPVNLSPPPPPVL 95
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -2
Query: 266 LTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPK-----LTLPDSTIQHAPPV 102
L+ P P L P V +P PP +L P P P+ P L+ P + +PP
Sbjct: 87 LSPPPPPVLLSPPPPPVNLSPPPPPVNLSP-PPPPVLLSPPPPPVLLSPPPPPVNLSPPP 145
Query: 101 GPLL 90
P+L
Sbjct: 146 PPVL 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -2
Query: 272 LVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTL----PDSTIQHAPP 105
++L+ P P L P V +P PP L P P + P T+ P TI +PP
Sbjct: 121 VLLSPPPPPVLLSPPPPPVNLSPPPPPVLLSPPPPPVLFSPPPPTVTRPPPPPTITRSPP 180
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -2
Query: 266 LTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPT---APIT*IPKLTLPD--STIQHAPPV 102
+T P P P A P P + P+ +P+T +P + P S ++ +P
Sbjct: 67 MTPPPMPMTPPPMPMAPPPMPMASPPMMPMTPSTSPSPLT-VPDMPSPPMPSGMESSPSP 125
Query: 101 GPLLGVG*ASPPAGAFRV 48
GP+ ASP +GAF V
Sbjct: 126 GPMPPAMAASPDSGAFNV 143
>At1g77960.1 68414.m09085 hypothetical protein
Length = 211
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -3
Query: 448 QSNITFRTPEVNPGGAT---NINVTINKR*PSLGVRRRRTSPSPWTERGTSGAVARRRSA 278
QS + FR P +N A N N I + LG RRR + PS + +S + A+RR
Sbjct: 102 QSPLRFRLPNINNRQAPVRPNANAIIPPQGEILGCRRR-SYPSRFEFGQSSSSSAQRRRI 160
Query: 277 VPS 269
VP+
Sbjct: 161 VPA 163
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 281 SCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPT-APIT*IPKLTLPDSTIQHAPP 105
S T +T P P P PA+ T + PPA + P PT +P + P + T P
Sbjct: 27 SPTTTVTPP--PVATPPPAATPAPTTTPPPA-VSPAPTSSPPSSAPSPSSDAPTASPPAP 83
Query: 104 VGPLLGVG*ASP 69
GP + G +P
Sbjct: 84 EGPGVSPGELAP 95
>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 CAIRALETLLPGEKLSPLLKEVLQEERAVSLNQAKSVLEFMLWGPLDVVQGVP-VDERE 208
C++R L+ G+ + L+ ++L E + A + L +L LDVVQGV +DE +
Sbjct: 670 CSVRESFCLVEGQAVDKLV-DLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEAD 727
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 248 PWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
P L P P S +P PP+ L P P A + P L P S PP+ P
Sbjct: 1070 PPLPPLPPSPPPPSPPLPPSSLPPPPPAAL--FPPLPPPPSQ-PPPPPLSP 1117
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 260 KPVRPWLAPSPASAVGTTPSRPPAHLGPRP 171
KP+ P L P P + PS PP+ + P P
Sbjct: 403 KPLLPTLPPPPVIEITRDPSPPPSPVQPPP 432
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -2
Query: 251 RPWLAPSPASAVGTTPSRPPAHLGPRPTA-----PIT*IPKLTLPDSTIQHAP 108
+ ++A P AV PA + P A P++ IP T PDST+Q +P
Sbjct: 426 KDYVASKPHLAVSDETLPEPASVSPTREAEVEINPVSPIPDSTNPDSTVQLSP 478
>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPD-STIQHAPPVGPLL 90
PV P P V P PP + P P+T +PKL LP S + P VGP L
Sbjct: 110 PVTVPKLPVPPVTVPKLPV-PPVTVPKLPVPPVT-VPKLPLPPISGLPIPPVVGPNL 164
>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
proline-rich cell wall protein [Medicago sativa]
GI:3818416; contains Pfam profile PF00234 Protease
inhibitor/seed storage/LTP family
Length = 291
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPD-STIQHAPPVGPLL 90
PV P P V P PP + P P+T +PKL LP S + P VGP L
Sbjct: 110 PVTVPKLPVPPVTVPKLPV-PPVTVPKLPVPPVT-VPKLPLPPISGLPIPPVVGPNL 164
>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
CL21 (RPL21) identical to 50S ribosomal protein L21,
chloroplast precursor (CL21) [Arabidopsis thaliana]
SWISS-PROT:P51412
Length = 220
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -2
Query: 356 STEASHIALAVDRTRNIRCSCSKTFSCTLVLTKPVRPWLAPSPASAVGT 210
ST ++H + R+ I CS SK +L L KP+ +L+PS AS T
Sbjct: 12 STFSAHCNVNSRRSSTILCSLSKP---SLNLAKPLTGFLSPSTASTSRT 57
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -2
Query: 236 PSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPL-LGVG*ASPPAG 60
P P + TP+ PP L P P P L T PP+G PPAG
Sbjct: 716 PPPPPPLSKTPAPPPPPLSKTPVPP----PPPGLGRGTSSGPPPLGAKGSNAPPPPPPAG 771
Query: 59 AFRVLLLRIGRG 24
R L +GRG
Sbjct: 772 RGRA-SLGLGRG 782
>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
to gi:3883120 gb:AAC77823
Length = 131
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 227 ASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAP---PVGPLLGVG*ASPPA 63
+SAV +P+ P+++G R +P K+T P + +P P L ASPP+
Sbjct: 18 SSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPS 75
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Frame = -2
Query: 260 KPVRPWLAPSP--ASAVGTTPS---RPPAHLGP 177
K VRP AP P A++VG S RPPA+LGP
Sbjct: 256 KYVRPGAAPIPGGAASVGGPSSGQVRPPANLGP 288
>At5g25550.1 68418.m03040 leucine-rich repeat family protein /
extensin family protein similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana];
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 433
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = -2
Query: 293 SKTFSCTLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQH 114
SK C P +P P+ +PS P P PT+P P P +
Sbjct: 363 SKPVDCDSFKCSPGSSCFSPPPSQI---SPSSQPLAPAPSPTSPPLSTPPPARPCPPVYS 419
Query: 113 APPVGPL 93
PP PL
Sbjct: 420 PPPPPPL 426
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPR-------PTAPIT*IPKLTLPDST--IQHA 111
T P P + SP S + PPA + P+ +AP+T P P S+ + ++
Sbjct: 215 TSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAPKSSSPVSNS 274
Query: 110 PPVGPLLGVG 81
P V P L G
Sbjct: 275 PTVSPSLAPG 284
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPP 105
P P +PSP + P PP+ P P + PKL P H+PP
Sbjct: 134 PTTPITSPSPPTNPPPPPESPPSLPAPDPPSNPLPPPKLVPP----SHSPP 180
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = -2
Query: 275 TLVLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRP---TAPIT*IPKLTLPDSTIQHAPP 105
T+ + P +A P S TTP PP + P P +P P T P +PP
Sbjct: 83 TVASSPPPPVVIASPPPSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPP 142
>At4g35490.1 68417.m05043 ribosomal protein L11 family protein
several ribosomal proteins L11
Length = 155
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 164 PIT*IPKLTLPDSTIQHAPPVGPLLG 87
P+ +LT+P + APPVGP LG
Sbjct: 12 PVAATIRLTVPAGGARPAPPVGPALG 37
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 27.9 bits (59), Expect = 6.5
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Frame = -2
Query: 356 STEASHIALAVDRTR-NIRCSCSKTFSCTLVLTKPVRPWLAPSPASAVGTTPSR-PPAHL 183
STE S + R ++ S ++F + L + + +SA G P + PP
Sbjct: 204 STENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRS 263
Query: 182 GPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG*ASPPAGA 57
P P P P P + PP P + +PP GA
Sbjct: 264 AP-PPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGA 304
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -2
Query: 239 APSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPP 105
+PS T+P PP H P P P+ P H+PP
Sbjct: 628 SPSTEETKTTSPQSPPVH-SPPPPPPVHSPPPPVFSPPPPMHSPP 671
>At3g14590.1 68416.m01847 C2 domain-containing protein low
similarity to SP|Q16974 Calcium-dependent protein kinase
C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
profile PF00168: C2 domain
Length = 737
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 234 KSSQRCRDNSLSSTGTPWTT-SNGPHNMNSKTD 139
K RC DN + G+ +T S P+N +S TD
Sbjct: 479 KGKSRCLDNKIQCAGSVRSTASTSPNNESSSTD 511
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGT-TPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG 81
P P P+P + T TP PP + G P+ P T P ST H P P G
Sbjct: 82 PSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPST--PS---HPSTPSHPTPSHPPSGGY 136
Query: 80 *ASPP 66
+SPP
Sbjct: 137 YSSPP 141
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 257 PVRPWLAPSPASAVGT-TPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPLLGVG 81
P P P+P + T TP PP + G P+ P T P ST H P P G
Sbjct: 82 PSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPST--PS---HPSTPSHPTPSHPPSGGY 136
Query: 80 *ASPP 66
+SPP
Sbjct: 137 YSSPP 141
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 431 SYSRSQSRWRDQYQCYYQ*TLAFSRSTEA-SHIALAVDRTRNIRCSCSKTFSCTLVLTKP 255
SYS + + Y + A+S ++ A S + A T S ++S T P
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 254 VRPWLAPSPASAVGTTPSRPPAHLGPRPTAP 162
P +P+ S T+P+ P G PT+P
Sbjct: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1711
>At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein
(FLA10)
Length = 422
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 260 KPVRPWLAPSPASAVGTTPSRPPAHL-GPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
K P AP P SA TP++ P+ + P PTA P + +S+ + AP P
Sbjct: 335 KSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASP--PAPPVDESSPEGAPSDSP 388
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -2
Query: 263 TKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGPL 93
T PV P+P TP+ PP P PT P+ P T P T P P+
Sbjct: 191 TPPVVTPPTPTPPVITPPTPT-PPVITPPTPTPPVVTPPTPTPPVVTPPTPTPPTPI 246
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 248 PWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDST 123
PW APSP+ P PA+ P P PI + LP T
Sbjct: 96 PWPAPSPSPFPNGGPIESPAY-PPAPPRPIPPHLRRPLPQRT 136
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -2
Query: 269 VLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
V T P AP PA+ S PPA P P P P + P + PP P
Sbjct: 54 VTTSPPPVTTAPPPANPPPPVSSPPPA--SPPPATP----PPVASPPPPVASPPPATP 105
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/58 (32%), Positives = 22/58 (37%)
Frame = -2
Query: 269 VLTKPVRPWLAPSPASAVGTTPSRPPAHLGPRPTAPIT*IPKLTLPDSTIQHAPPVGP 96
V T P AP PA+ S PPA P P P P + P + PP P
Sbjct: 54 VTTSPPPVTTAPPPANPPPPVSSPPPA--SPPPATP----PPVASPPPPVASPPPATP 105
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = -1
Query: 399 PISMLLSINVSLL*EYGGVAHRPRRGPNEEHQVQLLEDVQLYPRSDQTGKTVARSKSS-- 226
P+S L S + LL + R RR P + Q+ + L +S +++ +SS
Sbjct: 151 PVSDLSSAHTRLLPPKSTPSRRARRSPGHQLFRQVSDSQILGLKSPINNYSISEGRSSFV 210
Query: 225 -QRCRDNSLSSTGTPWTTSNGPHNMNSKTDFA*FNDTARSS 106
C ++ +TG+ + +S G +MN+ ++ ++ R S
Sbjct: 211 LSTCSND--FATGSQYASSEGGWSMNTFSELVAYSQRDRWS 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,487
Number of Sequences: 28952
Number of extensions: 327916
Number of successful extensions: 1340
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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