Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20897
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12)         118   7e-27
SB_50360| Best HMM Match : efhand (HMM E-Value=2.5e-05)                31   1.0  
SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_20158| Best HMM Match : Ank (HMM E-Value=1.4e-07)                   29   5.4  
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.2  
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12)
          Length = 225

 Score =  118 bits (283), Expect = 7e-27
 Identities = 55/83 (66%), Positives = 64/83 (77%)
 Frame = +2

Query: 5   DEVISDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDTLLKEGASGAFAQYNKDQLTP 184
           DE ISD EK+RI SDFI H+PPGEFNEVFNDVR+LL+NDTLLKE A+ +F+ YNK+Q TP
Sbjct: 5   DEPISDDEKIRIASDFIKHAPPGEFNEVFNDVRILLDNDTLLKERAASSFSDYNKEQFTP 64

Query: 185 VRLEGSELYTLITDHNELGGGRF 253
            +L G E   LIT H EL  G F
Sbjct: 65  AKLSGDE-QVLITRHGELSDGSF 86



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +1

Query: 442 GTVQLVACIEDHQFQPKNY 498
           G + +VAC+EDH+F+P+N+
Sbjct: 110 GLITIVACLEDHKFEPQNF 128



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 256 DPRSKCSFRYDHLRK 300
           DP+SK  F YDHLRK
Sbjct: 88  DPKSKQKFSYDHLRK 102


>SB_50360| Best HMM Match : efhand (HMM E-Value=2.5e-05)
          Length = 363

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 154 RSIQQGSTHARTSRRLRAVYTHHRPQRTWWRKVFDPRSKCSFR 282
           RS      H+  + R R V +H   +R + RKVFD    C+F+
Sbjct: 208 RSFSPTRRHSFDALRFRRVLSHRVKKREFHRKVFDLHVTCAFK 250


>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 483 STQELLERSWRSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEI 629
           +++ +  R+ +  + LT+ G    LRG+L  Q +  E GNV LV + EI
Sbjct: 41  ASRNVFSRNPQKAYHLTLAGSVLHLRGSLTRQPYETEGGNV-LVWNGEI 88


>SB_20158| Best HMM Match : Ank (HMM E-Value=1.4e-07)
          Length = 120

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 507 SWRSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVA 647
           SWRSV +L  G   TE R  L        DG V+L+ +K++    VA
Sbjct: 25  SWRSVKALFDGALLTEGRTALHYAAATGSDGIVKLLLNKKVDPTQVA 71


>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 266 PSVLSGMTIYAKKRPSMNPTSPIERMS 346
           PS  SG  + + KRP+  P+ P  RMS
Sbjct: 87  PSSSSGSEVKSPKRPNKTPSDPTTRMS 113


>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 438 LWYGTAGRLYRRSPVSTQELLERSWRSVWSLTVGGPATELRGTLRVQVHY 587
           LW  T G  Y R+ ++   +  R WR++W+ T+G           + VHY
Sbjct: 329 LWAYTIGVHYGRTLLAFT-MCVRYWRTLWAYTIGVHYWRTLWAYTIGVHY 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,284,600
Number of Sequences: 59808
Number of extensions: 535213
Number of successful extensions: 2422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)