Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20895
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    34   0.096
At3g49990.1 68416.m05466 expressed protein                             33   0.22 
At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to ...    30   1.6  
At3g01290.1 68416.m00037 band 7 family protein similar to hypers...    29   2.7  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   3.6  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   8.4  
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    27   8.4  

>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = -1

Query: 230 TSVGLTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 114
           T++ +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 108 TALEITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 408 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEIQKKKNLV 530
           +P   A+  D+K E P A+P   KT  Q +  E +++KN V
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEEKKERKNAV 462


>At5g22810.1 68418.m02667 GDSL-motif lipase, putative similar to
           EXL3 (GP:15054386) [Arabidopsis thaliana]
          Length = 337

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 317 IVLFGLWYSGYLVVTNWSRFGFFSSVAAATSVGLTESSILGATSRIG 177
           +V+F ++   Y + T  S FGF  +  A    GL E+SIL     +G
Sbjct: 254 LVVFDIYQPLYDLATRPSEFGFAEARRACCGTGLLETSILCNPKSVG 300


>At3g01290.1 68416.m00037 band 7 family protein similar to
           hypersensitive-induced response protein [Zea mays]
           GI:7716470; contains Pfam profile PF01145: SPFH domain /
           Band 7 family
          Length = 285

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 228 FGRFNRVINFGRDF*NWLSGNYV 160
           FG+F +V+N G  F  W+ G+YV
Sbjct: 21  FGKFQKVLNPGLQFVPWVIGDYV 43


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 279 DEVPAIPEAKKDDIAPE 329
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 381 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 295
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 145 VAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEK-KP 258
           V EEK  V A P       I DSVKPT   A  ++  KP
Sbjct: 344 VPEEKSFVDAAPPASDEAPIQDSVKPTSDEAPIQDSVKP 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,579
Number of Sequences: 28952
Number of extensions: 193906
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)