Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20892
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 53 2e-07
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 40 0.002
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 40 0.002
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 38 0.007
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 37 0.012
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 36 0.021
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 33 0.15
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 33 0.26
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 32 0.34
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 31 1.0
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 28 7.4
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4) 28 7.4
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 27 9.7
SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87) 27 9.7
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 27 9.7
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 487
CCGA KEN CM+I F + LLI+ E+A + GY+ ++ + ++ +I +YP
Sbjct: 425 CCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYP 480
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 508 AIDIIQTDLQCCGINSPADWADHG----LPIPSTCC 603
AID +Q D +CCG P+DW +G P +CC
Sbjct: 486 AIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGSCC 521
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP--VD 493
CCGA KEN CM+I F FLL++ + E+ G Y +E+ + +++ +I YP +
Sbjct: 72 CCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKAIENYPGKNE 131
Query: 494 KNVQKLLISYKQTCNA 541
K++ + +K C A
Sbjct: 132 KSINDMQTKFK-CCGA 146
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 105 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENF 254
MAL+G + VK L+ FN +F + GLI+ VGI A Y+ N+
Sbjct: 1 MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVNY 50
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Frame = +1
Query: 508 AIDIIQTDLQCCGINSPADW--ADH-GLP--IPSTCCSAQEINDGV 630
A+D +Q ++CCGI + DW +D+ GL +P +CC+ E + G+
Sbjct: 241 AVDDMQKTVKCCGITTYEDWKSSDNLGLTDNVPDSCCTTVEKDCGM 286
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 487 GRQERPEAIDIIQTDLQCCGINSPADWAD-----HGLPIPSTCCSAQEINDGV 630
G+ E+ +I+ +QT +CCG ++ DW + +P +CC +++ GV
Sbjct: 128 GKNEK--SINDMQTKFKCCGADNYTDWQSNIKMKNSSSVPDSCCKSEKAGCGV 178
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
C GA++EN C++ FSV L IIF +LA+G+ ++ +E ++ L ++T+Y + +
Sbjct: 65 CIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAVTKYRDNAD 124
Query: 500 VQKLLISYKQ 529
+Q L+ +Q
Sbjct: 125 LQNLIDGVQQ 134
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY 484
CCGA+KE+ C++ TF L II E+ GY+ +E+ + +++N +I Y
Sbjct: 344 CCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDTIVSY 398
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Frame = +1
Query: 475 YSISGRQERPEAIDIIQTDLQCCGINSPADW-------ADHGLPIPSTCCSAQEINDGV 630
Y G++ +A D IQ +CCGIN DW +H + +P +CC G+
Sbjct: 398 YGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHSI-VPDSCCKTVSKGCGI 455
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 421
C GA KEN CM+ TF V LLI+ E+A + Y
Sbjct: 74 CLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAY 107
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 475 YSISGRQERPEAIDIIQTDLQCCGINSPADWA-----DHGLPIPSTCC 603
Y SG+ +A D +Q +CCG+N DW + +P +CC
Sbjct: 138 YGSSGQDGVTKAFDALQEKQKCCGVNGYLDWKASKKYNGTSTVPDSCC 185
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 117 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 215
G +K L+ FN+LF I G+ ++ VG AE+
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY 484
CCGA+KE+ CM+ T+ + IF E+ + Y+ +E ++ ++ +++ +Y
Sbjct: 77 CCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNEY 131
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 105 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI 203
M+ + G C+K+++F FNLLF + G I +G+
Sbjct: 1 MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGV 33
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +1
Query: 475 YSISGRQERPEAIDIIQTDLQCCGINSPADWAD------HGLPIPSTCC 603
Y +SG AID I D +CCG DW + H +P +CC
Sbjct: 131 YHLSGHDAVTRAIDEIHRDFKCCGNAQYRDWFETKWAKTHPDMVPRSCC 179
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/65 (20%), Positives = 34/65 (52%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
C +KEN +++++ + L++IF+ E+A G+ + +++ + + + +Y
Sbjct: 78 CVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGKMNRYGFTDA 137
Query: 500 VQKLL 514
V K +
Sbjct: 138 VTKAI 142
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
C GA+KEN + ++ +F+ + +A G+ +++ L D R L + Y D +
Sbjct: 91 CVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVDPKAR-LEDGLKSYQQDSS 149
Query: 500 VQKLLISYKQT 532
Q+ I + QT
Sbjct: 150 KQE-FIDFIQT 159
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = +1
Query: 499 RPEAIDIIQTDLQCCGINSPADWADH-----GLPIPSTC 600
+ E ID IQT +CCGI S DW + P+P+ C
Sbjct: 150 KQEFIDFIQTRFKCCGIESYKDWQANRYFSCSSPVPTAC 188
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 472 HYSISGRQERPEAIDIIQTDLQCCGINSPADW 567
HY ++ ID +QT+L+CCG+NS DW
Sbjct: 149 HYRDPDKENFQFLIDRLQTNLKCCGVNSYTDW 180
Score = 33.5 bits (73), Expect = 0.15
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 126 SCVKYLMFCFNLLFAITGLIILIVG 200
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDK 496
C GA++EN ++ + + + + ++ GIA YM +D V+ L + Y DK
Sbjct: 100 CIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMH----QDKVVEKLKDDLKHYRDPDK 155
Query: 497 NVQKLLISYKQT 532
+ LI QT
Sbjct: 156 ENFQFLIDRLQT 167
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 472 HYSISGRQERPEAIDIIQTDLQCCGINSPADW 567
HY ++ ID +QT+L+CCGINS DW
Sbjct: 149 HYRDPDKENFQFLIDRLQTNLKCCGINSYNDW 180
Score = 33.5 bits (73), Expect = 0.15
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 126 SCVKYLMFCFNLLFAITGLIILIVG 200
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 129 CVKYLMFCFNLLFAITGLIILIVGI 203
CVKY +F N++F + G +IL VGI
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGI 83
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 511 IDIIQTDLQCCGINSPADW 567
ID +QT+LQCCG+ DW
Sbjct: 188 IDTVQTELQCCGVQGLNDW 206
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY 484
C GA++EN C++ + II + G G+ LE V L +I Y
Sbjct: 122 CIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAIVLY 176
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 320 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 499
C GA++EN C + + + + + +A G Y + D ++ L + +Y +D
Sbjct: 96 CVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQ-KDKVQALKERLKQDLKKY-LDDP 153
Query: 500 VQKLLISYKQT 532
+ + LI + QT
Sbjct: 154 LNQDLIDFMQT 164
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 129 CVKYLMFCFNLLFAITGLIILIVGI 203
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 505 EAIDIIQTDLQCCGINSPADW 567
+ ID +QT L+CCG+ S DW
Sbjct: 157 DLIDFMQTLLKCCGVESYKDW 177
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = +1
Query: 511 IDIIQTDLQCCGINS-PADWADH-----GLPIPSTCCSAQ 612
+D IQ LQCCG +S P DW ++ +P +CC +
Sbjct: 87 VDSIQERLQCCGADSGPNDWMNNKHFLQSASVPDSCCKQE 126
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 32.3 bits (70), Expect = 0.34
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 356 ITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 487
+ F V L ++F+ EL I GY+ ++++ + L+ ++ YP
Sbjct: 130 LQFGVILGLLFLVELGTAITGYIFRSEIKTGLSDGLDTALKDYP 173
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = +1
Query: 475 YSISGRQERPEAIDIIQTDLQCCG-INSPADWA-------DHGLPIPSTCC 603
Y S +++ +A+D Q+ +CCG P DWA + +P +CC
Sbjct: 525 YGQSNKEKATKAVDRAQSIFKCCGATQGPKDWANTAWAKSNTNQTVPESCC 575
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 120 GMSCVKYLMFCFNLLFAITGLI 185
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 320 CCGAVKENHCMIITFS 367
CCGAVKEN C ++ S
Sbjct: 217 CCGAVKENKCFLLLVS 232
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Frame = +1
Query: 508 AIDIIQTDLQCCGINSPADW-----------ADHGLPIPSTCCSAQEIN 621
AID IQ++L+CCG S DW A +P +CC +IN
Sbjct: 69 AIDGIQSNLKCCGGYSYHDWNHNKYFNCSAQAVEACGVPHSCCVEDQIN 117
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 320 CCGAVKENHCMIIT 361
CCGAVKE+ CM+ T
Sbjct: 332 CCGAVKESRCMLAT 345
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 217 FISALMPTIRMINPVMANRRLKQNMRYF 134
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 839
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -1
Query: 209 SPDANYQDDQSRNGKQKIEAKHEVLYTG---HSTFESHC 102
SP ++ RNG+ K+E+ YTG H+ +SHC
Sbjct: 22 SPLHAHKQSHCRNGEPKVESNKVQYYTGSPLHAHKQSHC 60
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 323 CGAVKENHCMIITFSVFLLIIFVAELAVGI 412
C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 38 CALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 230 VRIRVYFSPDANYQ---DDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKY 87
+ + +Y + ++ Y+ D+ R GK ++ +KH Y + + CY + Y
Sbjct: 56 LHLHLYDNRESEYRKRIDELEREGKWRLHSKHVTDYNKYIPARAKCYLLTY 106
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 62 SVVIQFGGNI*LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDHPD-SWHQG*NKLVSLHEL 238
+V + GN+ + + GSR W++ +PH L IDH D +W V+LH++
Sbjct: 127 AVALDMRGNVVVFHRGSRAWDLKFYMPHGLT--------IDHEDNTWITD----VALHQV 174
Query: 239 HR 244
H+
Sbjct: 175 HK 176
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 256 QVRSDRSHHCRHYCFHCRVLRLLWRCQREPLHDNNVFSIPLDHIR 390
QV +H C+ + V+ L W ++E + D+ + SI +D I+
Sbjct: 321 QVFEPLTHLCQEHGLAFEVVDLRWGVRQESVEDHCIVSICMDEIK 365
>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
Length = 770
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 612 LGGAARARYGQTVIGPVGRTVYTAALQVCLYDINSFWTFLSTGY*VMEAFRLR 454
L G RARY + + + AL + + DIN+ T + TG+ +A +LR
Sbjct: 605 LQGLFRARYSKELASGEANREWVTALPIVISDINATKTRM-TGFPPKDAIKLR 656
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 406 GHRWLHEAYGLGRFGYAQPERFHYSISGRQ---ERPEAIDIIQTD 531
GH +H+A G G ER+ YS R P +D++QTD
Sbjct: 152 GHMEVHKATGEGATNLGFVERYSYSALSRDFGLVIPLDLDVLQTD 196
>SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)
Length = 488
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 241 PMRTSQVRSDRSHHCRHYCFHCRVLRLLWRCQREPLHD 354
P R S+V D H H C V R+ C +HD
Sbjct: 336 PSRVSRVYHDCDDHVVHDQLKCNVSRVYHECDDHVVHD 373
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 326 GAVKENHCMIITFSVFLLIIFVAELAVG 409
GA K+N+ ++ +V +IFV E+++G
Sbjct: 82 GAFKQNNRVLTILAVLFFVIFVTEISLG 109
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Frame = +1
Query: 505 EAIDIIQTDLQCCGINSPADWADHGLP--------IPSTCC 603
E ID Q CCG+ DW G +PS+CC
Sbjct: 144 EMIDNTQMGSMCCGVTDYRDWFTSGWAARQGVSNRVPSSCC 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,961
Number of Sequences: 59808
Number of extensions: 398955
Number of successful extensions: 1136
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -