Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20892
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ...    29   2.0  
At2g34220.1 68415.m04187 hypothetical protein contains Pfam prof...    29   3.4  
At1g01910.2 68414.m00109 anion-transporting ATPase, putative sim...    28   4.5  
At1g01910.1 68414.m00108 anion-transporting ATPase, putative sim...    28   4.5  

>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
           SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
           Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
           domain
          Length = 487

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 395 ELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKLLISYKQTC 535
           +L + I    K  +L+D+V+R L   I     D NV+KLL   K  C
Sbjct: 352 DLVIIIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKC 398


>At2g34220.1 68415.m04187 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 718

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 472 HYSISGRQERPEAIDIIQTDLQCCGINSPADWAD 573
           H S      RP+ +D I  D+ CCG   P D A+
Sbjct: 273 HNSEPDFSARPKCVDEILADMICCGDWKPVDTAE 306


>At1g01910.2 68414.m00109 anion-transporting ATPase, putative
           similar to SP|O43681 Arsenical pump-driving ATPase (EC
           3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
           resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
           (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
           Anion-transporting ATPase
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 570 GPVGRTVYTAALQVCLYDINSFWTFLST--GY*VMEAFRLRITES 442
           G VG+T  ++ L +CL  + S    +ST   + + +AF+ R T+S
Sbjct: 28  GGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSDAFQQRFTKS 72


>At1g01910.1 68414.m00108 anion-transporting ATPase, putative
           similar to SP|O43681 Arsenical pump-driving ATPase (EC
           3.6.3.16) (Arsenite-translocating ATPase) (Arsenical
           resistance ATPase) (Arsenite-transporting ATPase) (ARSA)
           (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374:
           Anion-transporting ATPase
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 570 GPVGRTVYTAALQVCLYDINSFWTFLST--GY*VMEAFRLRITES 442
           G VG+T  ++ L +CL  + S    +ST   + + +AF+ R T+S
Sbjct: 28  GGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSDAFQQRFTKS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,023
Number of Sequences: 28952
Number of extensions: 275157
Number of successful extensions: 690
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)