Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20891
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   1.7  
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c...    29   2.2  
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c...    29   2.2  
At1g28320.1 68414.m03475 protease-related similar to Protease de...    29   2.9  
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge...    28   3.8  
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge...    28   3.8  
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic...    28   5.1  

>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 295 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 432
           +A++ +RHE  LN  LS        A M S H R S    R++++Y
Sbjct: 78  AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121


>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 584

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +2

Query: 65  CGYEYIITADLQTCLTEALQCS-YSFIVSPIIHPRFRRQSTNAGKNGGFTR------SDM 223
           CG E   + D+   L   +    + ++++P++ P +R        NG  T+      SD+
Sbjct: 17  CGVETDFSNDVTHLLNFNISTGGFDYVLAPLVDPSYRPSLVEG--NGVDTQVLPVCGSDL 74

Query: 224 VLSPQDWTS 250
           VLSP  W+S
Sbjct: 75  VLSPSQWSS 83


>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
           contains Pfam profile:  PF05185 Skb1 methyltransferase
          Length = 642

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +2

Query: 65  CGYEYIITADLQTCLTEALQCS-YSFIVSPIIHPRFRRQSTNAGKNGGFTR------SDM 223
           CG E   + D+   L   +    + ++++P++ P +R        NG  T+      SD+
Sbjct: 17  CGVETDFSNDVTHLLNFNISTGGFDYVLAPLVDPSYRPSLVEG--NGVDTQVLPVCGSDL 74

Query: 224 VLSPQDWTS 250
           VLSP  W+S
Sbjct: 75  VLSPSQWSS 83


>At1g28320.1 68414.m03475 protease-related similar to Protease degS
           [Precursor] (SP:P44947) [Haemophilus influenzae];
           similar to DegP protease precursor (GI:2565436)
           [Arabidopsis thaliana]
          Length = 709

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 418 ILQTYYETSHHPSLIWACVPMLCSRTYRECMKMMKKRKLGMSPGTGG 558
           ILQT  + S   S IWA +P L  +T +    + K  K G +  T G
Sbjct: 634 ILQTLDQPSEELSSIWALMPSLSPKTEQSLPNLPKLLKDGNNKQTKG 680


>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 389

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 534 WNEPWYWWS 560
           W +PWYWWS
Sbjct: 183 WLKPWYWWS 191


>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-2 from
           Homo sapiens [SP|O15488]
          Length = 497

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 534 WNEPWYWWS 560
           W +PWYWWS
Sbjct: 291 WLKPWYWWS 299


>At2g37980.1 68415.m04662 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 536 PSFLFFIIFMHSLYVLLHSIGTHAHIRDGWWLVS 435
           P+  +F++    L  L   +G+ A +  GWWL S
Sbjct: 93  PTIRYFLLRKLRLPFLFDGVGSTAVVGQGWWLCS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,964
Number of Sequences: 28952
Number of extensions: 271232
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)