Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20889
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                38   0.005
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.035
SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.57 
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    30   1.3  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              30   1.7  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   5.3  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           28   5.3  
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  28   7.0  

>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
 Frame = +1

Query: 433 TMERESNPME--ALCRSGCGFYGNPST 507
           +MERE+N  +   LCR+GCGFYGN +T
Sbjct: 4   SMERETNQTQQPTLCRNGCGFYGNSAT 30



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 477 GLRFLRQSLHSGLCSVCFKEALKKKQ 554
           G  F   S   G+CS C+K+ L++KQ
Sbjct: 21  GCGFYGNSATDGMCSKCWKDVLRRKQ 46


>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 439 ERESNPMEALCRSGCGFYGNPS 504
           ER +NP E  C++GCGFYGNP+
Sbjct: 13  ERLNNP-ELRCKTGCGFYGNPA 33


>SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 262 CSASSFPCW*YTIATSVSGPLKDTLLLKKRVSNQTNVFPSAQSLQLTNKRHHVC 101
           CSA S  C  + ++   + PL   +    R+S   NVFPS Q+    +KR  +C
Sbjct: 253 CSAYSGDCDIFVLSFCCTLPLFPHVQTYSRISIGPNVFPSVQTYSRVSKRIPLC 306


>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 218 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 111
           FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 575 FCQKISTGNTQVQPESLSPNICCSHLPQPSCVSPST 610


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 218  FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 111
            FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 1093 FCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTST 1128


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 148 PSAQSLQLTNKRHHVCAVVVSIHRHH 71
           PS+ S+ + +  HH  + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 258 EHKPDVTWPTFESKLVRXV 314
           EHKPDV WP+ +  LV  V
Sbjct: 408 EHKPDVVWPSAQPILVSTV 426


>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = -1

Query: 172 VSNQTNVFPSAQSLQLTNKR--HHVCAVVVS---IHRHHNEWLQNFE*K 41
           + +QTNV+P+A+  ++ N R  H + AV+V+   + +   E  +N E K
Sbjct: 231 ILDQTNVYPNARRRKMNNFRGFHRIAAVLVTTNEVLKERTERRENLEGK 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,676
Number of Sequences: 59808
Number of extensions: 357058
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)