Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20887
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 127 8e-30
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 127 8e-30
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 31 0.77
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 4.1
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 4.1
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.4
06_03_0543 + 21967787-21970261 29 5.4
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 5.4
01_01_0888 + 6990354-6991862,6991970-6992431 29 5.4
05_03_0130 - 8770354-8770678,8770799-8770992,8771091-8771203,877... 28 9.4
04_04_0730 + 27618981-27619143,27619237-27619349,27619695-276198... 28 9.4
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.4
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.4
01_01_0059 + 454707-454907,455676-456104,456278-456337,458179-45... 28 9.4
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 127 bits (307), Expect = 8e-30
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +1
Query: 241 PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 420
P+ +V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 421 HQPITEASYVNIPVIALCNTDSPLRFVDI 507
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 90.6 bits (215), Expect = 1e-18
Identities = 41/66 (62%), Positives = 49/66 (74%)
Frame = +2
Query: 53 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVLAARAVVA 232
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG +INL + WEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 233 IENPAD 250
IENP D
Sbjct: 72 IENPQD 77
Score = 76.2 bits (179), Expect = 3e-14
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +3
Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 677
IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 165 IPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 127 bits (307), Expect = 8e-30
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +1
Query: 241 PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 420
P+ +V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 421 HQPITEASYVNIPVIALCNTDSPLRFVDI 507
HQPI E++ NIP IA C+TDSP+R+VDI
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDI 163
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/77 (57%), Positives = 54/77 (70%)
Frame = +2
Query: 20 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWE 199
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG +INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 200 KLVLAARAVVAIENPAD 250
KL LAAR +VAIENP D
Sbjct: 61 KLQLAARVIVAIENPQD 77
Score = 79.0 bits (186), Expect = 4e-15
Identities = 33/60 (55%), Positives = 46/60 (76%)
Frame = +3
Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 689
IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 165 IPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 187 SCLGKTCSGCSCCRSHRE-PR*CVVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQ 363
+C G+ SGC CR R ++ R RAV AA + P R+TPG +
Sbjct: 51 ACRGRVASGCLACRRWEHLLRDGDPVAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHS 110
Query: 364 IQAAFREPRLLIVLD 408
RE IV D
Sbjct: 111 QARLVREMMKSIVAD 125
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 127 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSH 234
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 608 LVTGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDTMSTNLS 489
+ +G H + QH Q PP + G + +A +T++ LS
Sbjct: 143 VTSGHHHQQQQHNVVQPPPRDASPAGLMSIAEETLTEFLS 182
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 120 TFSAPRWVVAASILVTSSSLRASTSNP 40
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 546 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 635
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 261 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 353
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 263 EMTTHQRGSRWLRQHEQPEQ 204
++TTH RG R +Q +QPEQ
Sbjct: 135 QITTHLRGGRQQQQQQQPEQ 154
>05_03_0130 -
8770354-8770678,8770799-8770992,8771091-8771203,
8771320-8771482
Length = 264
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 496 FVDIVSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 606
F +++ +PS+ + CG C+ VKC G C PVT
Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVT 107
>04_04_0730 +
27618981-27619143,27619237-27619349,27619695-27619888,
27620141-27620465
Length = 264
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 496 FVDIVSHATPSLPTLLV*CGGCWHVKC*GFVVCF--PVT 606
F +++ +PS+ + CG C+ VKC G C PVT
Sbjct: 69 FSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVT 107
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 647 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 531
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 163 WYPCDQLASCLGKTCSGCSCCRSHREP 243
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>01_01_0059 +
454707-454907,455676-456104,456278-456337,458179-458263,
459403-459716
Length = 362
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +1
Query: 424 QPITEASYVNIPVIALCNTDSPLRFVDIVS 513
Q + E S +++ V+ +C+ P++F D+++
Sbjct: 153 QHVQEGSLISLDVVLICSAARPVKFHDVIT 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,710,633
Number of Sequences: 37544
Number of extensions: 528715
Number of successful extensions: 1449
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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