Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20887
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 157 7e-39
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.4
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035) 30 2.4
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.4
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.1
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 29 4.1
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.1
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 5.5
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 5.5
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 157 bits (382), Expect = 7e-39
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +1
Query: 256 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 435
VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP DHQP+T
Sbjct: 76 VISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVT 135
Query: 436 EASYVNIPVIALCNTDSPLRFVDI 507
EASYVNIPVIA CNTDSPLR VD+
Sbjct: 136 EASYVNIPVIAFCNTDSPLRHVDV 159
Score = 111 bits (266), Expect = 8e-25
Identities = 49/73 (67%), Positives = 59/73 (80%)
Frame = +2
Query: 32 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTRVINLRRAWEKLVL 211
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG +IN+++ WEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 212 AARAVVAIENPAD 250
AAR +V IENPAD
Sbjct: 61 AARIIVTIENPAD 73
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +3
Query: 510 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQA 680
IPCN K HSIGLM+WLLAREVLR+RG + R W+++ DL+FYRDPEE+EK+EQ A
Sbjct: 161 IPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 327 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 506
C H+ C SSCI S+ DCI C+ PS F C+ +C T++C +
Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918
Query: 507 CIP-CNTKSS 533
C P C + SS
Sbjct: 919 CHPTCASCSS 928
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 32.3 bits (70), Expect = 0.44
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 290 TAR*PKGRDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 135
T+R R E + H+R RQHE+ RH++S H +H RH++
Sbjct: 51 TSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRSRHKT 101
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 269 RDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 135
R E + H+R RQHE+ RH+ S H +H RH +
Sbjct: 103 RHETSRHERSRHETRQHERSRHKTSRHEKS-RHETSRHERSRHET 146
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -1
Query: 290 TAR*PKGRDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 135
T+R + R E + H+ +HE RH+ S H QH RH++
Sbjct: 31 TSRHERSRHETSRHESSPHETSRHETSRHETSRHERS-RHETRQHERSRHKT 81
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 269 RDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 135
R E + H+R RQHE+ RH++S H +H RH++
Sbjct: 18 RHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHERSRHKT 61
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 269 RDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRHRS 135
R E + H+R RQHE+ RH+ S H +H RH +
Sbjct: 63 RHETSRHERSRHETRQHERSRHKTSRHETS-RHEKSRHERSRHET 106
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 290 TAR*PKGRDEMTTHQRGSRWLRQHEQPEQVFPRHDAS*SHGYHQHVVCRH 141
T+R + R E H+R +HE RH+ S H +H RH
Sbjct: 21 TSRHERSRHETRQHERSRHKTSRHESSRHKTSRHERS-RHKTSRHETSRH 69
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 403 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 498
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 477 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 313
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_54948| Best HMM Match : PAN (HMM E-Value=0.0035)
Length = 396
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 76 HQNACCNHPSWGRKC*LPDGDLCLQ---TTC*WYPCDQLASCLGKTCSGCSCCRSHRE 240
H ++C N G++C +G C++ + C SC G+TC C RS R+
Sbjct: 126 HMSSCSNGCCLGQRC--LNGGTCVEHCEDPKKKFSCACTPSCSGRTCESCGTYRSCRD 181
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 534 HSIGLMWWLLAREVLRLRGVLP 599
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 384 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 509
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 631 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHG 512
K+TT RWS+G TP ++ H I L+ HG
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHG 1433
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 636 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 517
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 477 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 319
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +3
Query: 243 PLMCR----HLITALRSACCTEVCRAHRCY 320
PL+CR +++ +L CC +CRA CY
Sbjct: 1158 PLLCRAVPCYVVLSLAMPCCPLLCRAVPCY 1187
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +3
Query: 243 PLMCR----HLITALRSACCTEVCRAHRCYA 323
PL+CR +++ +L +CC +C A CYA
Sbjct: 1178 PLLCRAVPCYVVLSLAMSCCPLLCLAVPCYA 1208
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +3
Query: 243 PLMCR----HLITALRSACCTEVCRAHRCYAYCGAFHTRCFY*PDSSCIP*TSSLDCIGP 410
PL+C + + +L +CC +CRA CYA SC P L C+
Sbjct: 1198 PLLCLAVPCYALLSLAMSCCPLLCRAVPCYALLSL---------AMSCCP----LLCLAV 1244
Query: 411 CTRPSTHY*SFI--CQHSCDCFVQHRLPTKIC 500
+ PS+ + C++ C + H L +C
Sbjct: 1245 QSGPSSGIFGAVCFCRYECMVVLGHNLYVAVC 1276
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 477 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 319
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 533 GRLGVAWDTMSTNLSGESVLHKAITGMLTYEASVMG 426
G + V W+T ST+ S+ ++G LT+ +V G
Sbjct: 74 GTITVTWETFSTSGDNASLDISPVSGQLTFAENVSG 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,068,685
Number of Sequences: 59808
Number of extensions: 607666
Number of successful extensions: 1686
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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