Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   2.6  
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)                  29   2.6  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42685| Best HMM Match : MFS_1 (HMM E-Value=0.073)                   28   3.4  
SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)                   27   6.0  
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)               27   6.0  
SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)                    27   6.0  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.9  
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 317 SIKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQDDFNSNKGVA-GTKSES 472
           ++ + + + M Q+S+Y+ S  ST S+++   ++    D +S+ GVA   +SE+
Sbjct: 351 AVGKPRDDFMSQDSLYSCSPKSTDSLNMKPTVAPRAKDSSSSSGVADSVRSEA 403


>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
          Length = 509

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 120 PYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFL 218
           PYH + IM  L  N   EPV + I  Q+ EP L
Sbjct: 177 PYHRIFIMLLLELNQP-EPVLEAINFQVSEPVL 208


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 120 PYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFL 218
           PYH + IM  L  N   EPV + I  Q+ EP L
Sbjct: 785 PYHRIFIMLLLELNQP-EPVLEAINFQVSEPVL 816


>SB_42685| Best HMM Match : MFS_1 (HMM E-Value=0.073)
          Length = 217

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -1

Query: 359 LNSVAW---FRLATVLWTLSLMCSTSWPLARTRPYHKTY 252
           +N+V W   +R+ +V++ LS  C+ SWP     P ++T+
Sbjct: 111 VNAVGWRHAYRILSVVFVLS--CALSWPFREEAPDNETH 147


>SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 111 NGEPYHSLVIMNRLNTNNLIEPVSK 185
           N   YHSL + +R NTNN  + +S+
Sbjct: 55  NDHKYHSLALQDRTNTNNKSKVLSR 79


>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 362 KLNSVAWFRLATVLWTLSLMCSTSWPLARTRPYHKTYTVNA 240
           KL    WF LA ++W +  +   +W + +T   +K   VNA
Sbjct: 406 KLAIYIWFALAPLIWAVVPLLGAAW-VTKTYNKYKFVVVNA 445


>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
          Length = 556

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 242 HLRYRFYDKDECVRVATKLNTLVKESIK 325
           HL    Y+ + C  + TKL+ L+K+ +K
Sbjct: 403 HLNEHSYEAEFCKHMTTKLSELIKQRVK 430


>SB_26268| Best HMM Match : TIMP (HMM E-Value=2e-06)
          Length = 273

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   YAREIVDSATHVALYTFEENEWEK 74
           + REIV S T+  +Y    N+WEK
Sbjct: 217 WGREIVSSCTYGHMYCALSNDWEK 240


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 348  GMVSPCDCFMDSFTNV 301
            GMV+ C C +DS TNV
Sbjct: 3507 GMVTQCSCLLDSKTNV 3522


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 111 NGEPYHSLVIMNRLNTNN 164
           N   YHSL + +R NTNN
Sbjct: 190 NDHQYHSLALQDRTNTNN 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,233
Number of Sequences: 59808
Number of extensions: 284806
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)