Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   3.1  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    24   3.1  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   5.4  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    23   7.2  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    22   9.5  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = -1

Query: 191 NSFRHWFY*VVSVQPVHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNF 12
           N+  H+   +++   V+N+  V+W   +      +++V + P+ +  CV      T D F
Sbjct: 119 NADGHYEVTLMTKATVYNNGMVIWQPPAVYKSSCSIDVEYFPYDVQTCVLKLGSWTYDGF 178


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
          receptor protein.
          Length = 611

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 71 LPFVLFKCVKGNVGSTIDNFTS 6
          L  V ++ + GNV + ++NFT+
Sbjct: 7  LSTVTYELISGNVSAALENFTA 28


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 146 VHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGS-TIDNF 12
           V++   V+W   +  H    LN+   PF   KC+   +GS T D +
Sbjct: 144 VYSEGKVLWVPPTEYHAFCELNMRLWPFDYQKCIV-KIGSWTFDGY 188


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
          coupled receptor protein.
          Length = 612

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 71 LPFVLFKCVKGNVGSTIDNFTS 6
          L  V ++ + GNV + ++NFT+
Sbjct: 7  LSTVTYELIWGNVSAALENFTA 28


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +1

Query: 277 RASGHEVEHISERVHKTVARRNHATEFSLQFVYNFNSIY 393
           +  G   EH SE  H++ +  NH  +  +  ++   +I+
Sbjct: 656 KRKGKSTEHGSEVAHQSSSSSNHHDDEPMSEIFIHQAIH 694


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,661
Number of Sequences: 2352
Number of extensions: 9688
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)