Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20886
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family...    79   1e-15
At3g07720.1 68416.m00931 kelch repeat-containing protein similar...    32   0.17 
At2g36850.1 68415.m04519 glycosyl transferase family 48 protein ...    28   2.8  
At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase, p...    28   3.7  
At1g78530.1 68414.m09153 protein kinase family protein contains ...    28   3.7  
At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containi...    27   4.9  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    27   6.5  
At2g46760.1 68415.m05834 FAD-binding domain-containing protein s...    27   8.6  

>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; contains some similarity to
           transcription factor [Danio rerio]
           gi|15617376|emb|CAC69871
          Length = 367

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 3   YAREIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEP 176
           Y  EI+ +A HV  Y F  E ++W + ++EG+LFV  R+ +P    ++MNR NT+NL+E 
Sbjct: 30  YIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFIVMNRRNTDNLVEN 89

Query: 177 VSKGIELQLKEPFLLYRNAKCRIYGIGF 260
           +    E +++ P+LLYRNA   + GI F
Sbjct: 90  LLGDFEYEVQGPYLLYRNASQEVNGIWF 117


>At3g07720.1 68416.m00931 kelch repeat-containing protein similar to
           epithiospecifier (GI:16118838) [Arabidopsis thaliana];
           contains Pfam PF01344: Kelch motif (5 repeats)
          Length = 329

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 299 NTLVKESIKQSQGETMPQNSVYNSSTTSTQSIDIF 403
           NTL  +    S GET PQN  Y+S T  +Q++ +F
Sbjct: 107 NTLTNQWKLLSSGETGPQNRSYHSITADSQNVYVF 141


>At2g36850.1 68415.m04519 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1680

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 223 YSKNGSFNCSSIPLDTGSIRLLVFSLFII 137
           Y  N   +  SIP +TGS+RL+ + LF++
Sbjct: 607 YLSNREMDLLSIPSNTGSLRLVQWPLFLL 635


>At2g30210.1 68415.m03674 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 570

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 42  LYTFEENEWEKTNIEGALFVYSRNGEPY 125
           L+    + W +  + GAL +Y R G PY
Sbjct: 125 LWWHAHSRWLRATVYGALIIYPRLGSPY 152


>At1g78530.1 68414.m09153 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 355

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 197 TVKGAVFTIS*RQVPHLRYRFYDKDECVRVATKLNTLVKESIKQSQGETMPQNSVYNSST 376
           T+KG V++     +  L  R    DE     TKL T VK  ++  + E +  N +  SS 
Sbjct: 251 TMKGDVYSFGVVLLELLTGRKPTDDEFFEEGTKLVTWVKGVVRDQREEVVIDNRLRGSSV 310

Query: 377 TSTQSI-DIFSM 409
              + + D+F +
Sbjct: 311 QENEEMNDVFGI 322


>At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = +3

Query: 6   AREIVDSATHVALYTFEENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSK 185
           AR+I D  T  +L T  E  W    I      YSRNG P  +L++   +   + IEP + 
Sbjct: 186 ARKIFDDVTDSSLLT--EKVWAAMAIG-----YSRNGSPRDALIVYVDM-LCSFIEPGNF 237

Query: 186 GIELQLK 206
            I + LK
Sbjct: 238 SISVALK 244


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 15  IVDSATHVALYTFEENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLI 170
           ++   TH  + TFEEN  E+  I   + +YS+ G   ++  + +++   +L+
Sbjct: 56  MLGKCTHARILTFEENP-ERFLINNLISMYSKCGSLTYARRVFDKMPDRDLV 106


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 241 RHLALRYSKNGSFNCSSIPLDTGSIRLLVFS 149
           ++L LRY   G  NC S+ +  G+  L+V S
Sbjct: 74  QYLTLRYFPEGKRNCYSLDVKRGTTYLIVVS 104


>At2g46760.1 68415.m05834 FAD-binding domain-containing protein
           strong similarity to At1g32300, At2g46740, At2g46750,
           At5g56490; contains PF01565: FAD binding domain
          Length = 603

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -1

Query: 122 WFTISTVHKQSTL---NVGFLPFVLFKCVKGNVGSTIDN 15
           W TI  VH  STL    +   P    KCV GN   T+ N
Sbjct: 17  WRTIFVVHCISTLVFTTISTPPEDPVKCVSGNTNCTVTN 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,319
Number of Sequences: 28952
Number of extensions: 186874
Number of successful extensions: 536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)