Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20885
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 71 8e-13
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 71 8e-13
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 65 5e-11
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 61 8e-10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 56 2e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 56 2e-08
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 55 4e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 55 4e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 54 9e-08
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 40 1e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 48 5e-06
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 46 3e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 5e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 43 2e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 42 5e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 7e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 7e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 41 7e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 41 0.001
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 41 0.001
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 41 0.001
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.001
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 40 0.002
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 40 0.002
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.002
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 39 0.003
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 39 0.004
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 39 0.004
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 0.004
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.004
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 36 0.004
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.005
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.007
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.007
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.009
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.009
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.009
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.012
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.012
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.012
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.012
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 37 0.015
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.020
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.020
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 36 0.020
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 36 0.020
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.027
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.027
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.035
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.035
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.035
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.035
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.035
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.047
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.047
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.047
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.047
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.047
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 35 0.047
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.047
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.047
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.062
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 35 0.062
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 35 0.062
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 35 0.062
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.062
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.062
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.062
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.082
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 34 0.082
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 34 0.11
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 34 0.11
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.11
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.14
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 33 0.14
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 33 0.14
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 33 0.14
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.14
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.19
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.19
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.19
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.19
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.19
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.25
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.25
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.33
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 32 0.33
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.33
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.33
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 32 0.33
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.33
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 32 0.33
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 32 0.44
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 32 0.44
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 32 0.44
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.44
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 32 0.44
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.58
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 31 0.58
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.58
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.76
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.76
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.76
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 1.0
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 1.0
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.3
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 1.3
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 30 1.3
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 30 1.8
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 30 1.8
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.8
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 30 1.8
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 29 2.3
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.3
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.3
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 2.3
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.3
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 2.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 2.3
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 29 3.1
At2g47390.1 68415.m05915 expressed protein 29 3.1
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.1
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.1
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 3.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 4.1
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 4.1
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 4.1
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 4.1
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 4.1
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 5.4
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 5.4
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 7.1
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 28 7.1
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 7.1
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 7.1
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 7.1
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 7.1
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 7.1
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 7.1
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 7.1
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 9.4
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 27 9.4
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 27 9.4
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 27 9.4
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 9.4
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.4
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 27 9.4
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 27 9.4
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 27 9.4
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 426
FG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 427 RHG---------KIFVGGLSSEISDDEIRNFFSEFG 507
G KIFVGG+ S +++DE+++FF+++G
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPK 414
F YG + V D T RSRGF F++F + E +D++++ G + + KK +PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 415 KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
K+ R + S+D ++ +G
Sbjct: 189 KSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 668
N++E ++ D N+ +GF F+ F+SE+VV++LL K + +V++K+A PK
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 70.9 bits (166), Expect = 8e-13
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KA 426
FG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKG 97
Query: 427 RHG---------KIFVGGLSSEISDDEIRNFFSEFG 507
G KIFVGG+ S +++DE+++FF+++G
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYG 133
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 378
F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
D+ Q +GF FITF VV+ +++ I GK+V++KR PK
Sbjct: 53 DRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK 96
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 608
N++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 64.9 bits (151), Expect = 5e-11
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FG YGEI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 62 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRG 120
Query: 433 G---------KIFVGGLSSEISDDEIRNFFSEFG 507
KIFVGG+ S + DDE + FF +FG
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFG 154
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 429
F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPK 668
D + + +GF F+T+ESE +V+ LL R + G +V++K+A PK
Sbjct: 164 DHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
D+ Q +GF F+T+ VV+ +++ I GK+V++KR P+
Sbjct: 76 DRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 92 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 253
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E H
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKH 61
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GKIFVGGL+ E + E F ++G
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYG 66
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK------ 414
FG +GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRG 144
Query: 415 ------KAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
KA ++ KIFVGGL + +DE++N+F +G
Sbjct: 145 DKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYG 181
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 429
F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+ +
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 668
+I+E ++ +D + +GF F+TF++E V+ L K +G K+V++KRA PK
Sbjct: 182 DIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 101 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETT 232
T D++ NG A + GG S DH + + KLFVGG+SWETT
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETT 78
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+FVGG+S E + + N+F +FG
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFG 90
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
D+ +GF F+TF V +L+ I ++VD+KR P+ D
Sbjct: 100 DRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPRGD 145
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 57.2 bits (132), Expect = 1e-08
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 28/113 (24%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 429
FG YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 35 FGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRD 93
Query: 430 ------------------HG---------KIFVGGLSSEISDDEIRNFFSEFG 507
HG KIFVGGL S I++ E +N+F +FG
Sbjct: 94 DQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFG 146
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FITF+SE+ V+ +L + GK V+VKRA PK
Sbjct: 148 IADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
+++E + D+T + +GF FI F V ++ K I G+ V+ K+A P+ D
Sbjct: 40 DLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRDD 94
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDH 253
KLF+GG+SW+T ++ L+++
Sbjct: 16 KLFIGGISWDTDEERLQEY 34
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GG+S + ++ ++ +F ++G
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYG 39
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 429
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 430 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 507
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLEH 262
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 429
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 430 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 507
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLEH 262
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR- 429
F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 26 FSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPRD 84
Query: 430 ------------------HG------KIFVGGLSSEISDDEIRNFFSEFG 507
HG KIFVGGL S I+++E +N+F +FG
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFG 134
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK
Sbjct: 136 IADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPK 188
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLEH 262
KLF+GG+SW+T ++ LRD+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSN 28
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GG+S + ++ +R++FS +G
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYG 30
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 26 FTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSRE 84
Query: 433 -------------------------GKIFVGGLSSEISDDEIRNFFSEFG 507
KIFVGGL ++D+E R +F +G
Sbjct: 85 EQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYG 134
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+ +V + +D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 136 VTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 130 FEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Query: 433 GKIFVGGLS 459
GG S
Sbjct: 190 ANPGGGGRS 198
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 188 DDRKLFVGGLSWETTDKELRDH 253
D KLFVGG+SWET + +LR+H
Sbjct: 4 DQGKLFVGGISWETDEDKLREH 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+FVGG+S E +D++R F+ +G
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
DK + +GF F+ F V++ +L+ K +I +EVDVKRA + +
Sbjct: 40 DKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREE 85
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 92 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHLE 259
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R + E
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFE 131
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 433 G---------------------KIFVGGLSSEISDDEIRNFFSEFGI 510
KIFVGGL+S +++ E + +F++FG+
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 131
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.062
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDH 253
KLF+GG+SWET++ LRD+
Sbjct: 7 KLFIGGISWETSEDRLRDY 25
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
+LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 32 VLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 173 APGRDDDRKLFVGGLSWETTDKELRDH 253
+PG + +K+FVGGL+ T+ E + +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKY 125
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 26 FHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRD 84
Query: 433 G---------------------KIFVGGLSSEISDDEIRNFFSEFGI 510
KIFVGGL+S +++ E + +F++FG+
Sbjct: 85 DHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 131
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 132 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 34.7 bits (76), Expect = 0.062
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDH 253
KLF+GG+SWET++ LRD+
Sbjct: 7 KLFIGGISWETSEDRLRDY 25
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GG+S E S+D +R++F FG
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFG 30
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
+LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 32 VLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 173 APGRDDDRKLFVGGLSWETTDKELRDH 253
+PG + +K+FVGGL+ T+ E + +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKY 125
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 54.0 bits (124), Expect = 9e-08
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 26 FSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSRE 84
Query: 433 -------------------------GKIFVGGLSSEISDDEIRNFFSEFG 507
KIFVGGL ++ DE R +F +G
Sbjct: 85 EQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYG 134
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F YG + + D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 130 FETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
D+T + +GF F++F+SE V+ +L + GK+V+VKRA PK
Sbjct: 144 DQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPK 188
Score = 34.7 bits (76), Expect = 0.062
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
+L+V + +K + +GF F+ F V++ +L+ K I ++VDVKRA + +
Sbjct: 32 VLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD-KHHIDNRDVDVKRAMSREE 85
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 188 DDRKLFVGGLSWETTDKELRDHLEH 262
D KLF+GG+SW+T + LR++ +
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSN 28
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
GK+F+GG+S + ++ +R +FS FG
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFG 30
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 420
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 421 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFG 507
R KIFVGGL S +++ + + +F +FG
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 516 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 32 VIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +2
Query: 182 RDDDRKLFVGGLSWETTDKELRDH 253
+ D+ KLF+GG+SW+T ++ L+++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEY 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 430 HGKIFVGGLSSEISDDEIRNFFSEFG 507
+GK+F+GG+S + +++ ++ +FS FG
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFG 30
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 125 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHLE 259
N N S S PGR RK+FVGGL T+ + + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 23/108 (21%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA---- 420
F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 421 -------------------KARHGKIFVGGLSSEISDDEIRNFFSEFG 507
R KIFVGGL S +++ + + +F +FG
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFG 132
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 516 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK
Sbjct: 136 DVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 32 VIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +2
Query: 182 RDDDRKLFVGGLSWETTDKELRDH 253
+ D+ KLF+GG+SW+T ++ L+++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEY 25
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 430 HGKIFVGGLSSEISDDEIRNFFSEFG 507
+GK+F+GG+S + +++ ++ +FS FG
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFG 30
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 125 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHLE 259
N N S S PGR RK+FVGGL T+ + + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH--- 432
+G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K A +
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKVATPKEEMR 84
Query: 433 ------GKIFVGGLSSEISDDEIRNFFSEFG 507
+IFV + S +S+ + R+ F +G
Sbjct: 85 QPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
I ++ MP D Q +G FITF S V DL++ +GG V V RATPK D
Sbjct: 117 ITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPKED 170
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 405
FG +G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 260 FGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 674
D++ + +GF ++TF S + + LK + +G + ++VK ATPK +
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPKEE 82
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 665
+I + +P D ++ +GF F+TF +E V D + I G+EV + ATP
Sbjct: 265 HIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATP 316
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
KIFVG L E S D++R++F FG
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFG 264
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +3
Query: 516 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+V + D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 148 DVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 35.5 bits (78), Expect(2) = 1e-06
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 424 ARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+R KIFVGGLSS +++E +++F FG
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFG 144
Score = 34.3 bits (75), Expect(2) = 1e-06
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F YG + V + TG+ RGF F+ F + K + H I K VD +KA +H
Sbjct: 26 FSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRKH 84
Score = 31.9 bits (69), Expect = 0.44
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGG++ E S++ ++ +FS +G
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYG 30
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 194 RKLFVGGLSWETTDKELRDHLE 259
+K+FVGGLS TT++E + + E
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFE 141
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 405
+F A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 152 TFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 406 ----DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGIS 513
DP K + ++V LS +SD+E+ F EFG++
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV------- 405
+F G++ S+ V D T RS G+ ++ + P+ + + +N + +
Sbjct: 64 AFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVR 123
Query: 406 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
DP K+ G IF+ L I + FS FG
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFG 157
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
F +G I S V DP+ G SRG F+ F PE + +
Sbjct: 347 FAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 53 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 59 ITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 361 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGI 510
K + +H + NK + + KIFVGGL+S +++ E + +F++FG+
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGM 58
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 173 APGRDDDRKLFVGGLSWETTDKELRDH 253
+PG + +K+FVGGL+ T+ E + +
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKY 52
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.1 bits (72), Expect(2) = 5e-05
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFG 345
Score = 31.1 bits (67), Expect(2) = 5e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVF 339
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 429
+F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEK 486
Query: 430 HGK 438
GK
Sbjct: 487 PGK 489
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 429
+F YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/53 (20%), Positives = 30/53 (56%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 668
+++ ++ D+ + +GF F+TF S + ++ ++ + + G+ + V AT +
Sbjct: 60 VVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTIN 393
+F ++G I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 155 TFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 394 NKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGI 510
++ D R ++V L EI +DE+R F +FG+
Sbjct: 214 RQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGV 254
Score = 33.9 bits (74), Expect = 0.11
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT--------INNKKVD 408
F + S+ V D N RS G+A+I F P + M A +T I D
Sbjct: 69 FKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRD 127
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
P + G IF+ L + I + + FS FG
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 351
F YG + S V +P G SRGF F+ + PE
Sbjct: 352 FSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 34.3 bits (75), Expect = 0.082
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET + LR H E
Sbjct: 25 KVFVGGLAWETQSETLRQHFE 45
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 671
ILE + DK + KG+ F+TF + P I G+ + A+ P+P
Sbjct: 50 ILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRP 106
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYG 48
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 408
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+ + K+FVG L +S+ E+++ FS++G
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 408
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+ + K+FVG L +S+ E+++ FS++G
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSKYG 130
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 354
F YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 44 FDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET + LR H +
Sbjct: 25 KVFVGGLAWETQSETLRRHFD 45
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E + +R F ++G
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYG 48
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 662
+ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 49 DILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLAS 100
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 19/105 (18%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 405
+F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 147 AFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIG 206
Query: 406 ----DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFSEFG 507
+P A A+H KI+V +S++I ++ FFS FG
Sbjct: 207 PVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFG 251
Score = 35.9 bits (79), Expect = 0.027
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET E+R + E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 671
ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 43 ILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E DE+R +F +FG
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFG 41
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET E+R + E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 671
ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 43 ILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 659
I+ ++ D + KGF F+TF + + P TI G+ V+ K A
Sbjct: 35 IVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 405
+F YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 182 AFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 665
I E + DK + KGF F+ F++ + LK P++ + + V A P
Sbjct: 189 ITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARP 240
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 170 EAPGRDDD-RKLFVGGLSWETTDKELRDHLE 259
E+ RD R +FV GL W+TT + L+ E
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFE 184
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 433 GKIFVGGLSSEISDDEIRNFF 495
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 659
++ E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 433 GKIFVGGLSSEISDDEIRNFF 495
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 659
++ E + FDK + +GF +++ + L P + I GK ++ K A
Sbjct: 192 DVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---K 402
F +G I S V T + G+SRG+ F+ F+ A ++++ + A + K K
Sbjct: 132 FKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Query: 403 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
D K + ++ +++ L +++S+D +R F+EFG
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFG 225
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 366
F G I S + D G+S+GF F+ F P E+ID V
Sbjct: 324 FSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-------- 405
+F + + S+ + D ++GRS + + F + + + + +++ N K+
Sbjct: 43 AFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Query: 406 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
P + G +FV L +++ +++ F +FG
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG 136
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 426
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 427 R 429
R
Sbjct: 87 R 87
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/52 (21%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 659
++++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 33 DVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 426
+F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86
Query: 427 R 429
R
Sbjct: 87 R 87
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/52 (21%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 659
++++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 33 DVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEA 84
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 354
F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
KIFVGGL+ E D +R +F +FG
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFG 46
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET +R + E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFE 43
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 399
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 170 EAPGRD-DDRKLFVGGLSWETTDKEL 244
EA RD RK+FV GL WETT + L
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETL 120
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 399
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGP 183
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 170 EAPGRD-DDRKLFVGGLSWETTDKEL 244
EA RD RK+FV GL WETT + L
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETL 120
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
+F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GG++ + +D +R F+++G
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYG 64
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +1
Query: 265 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 444
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 445 VGGLSSEISDDEIRNFFSEFG 507
+G + ++DE R + G
Sbjct: 200 IGNIPKNWTEDEFRKVIEDVG 220
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 271 IESINVKTDP-NTGRSRGFAFIVF 339
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 430 HG-KIFVGGLSSEISDDEIRNFFSEFG 507
HG ++F+GGL ++ ++++R+ E G
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIG 140
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKA 426
+F YG + V D +GRSRGF FI F +++D+ +AA ++ + + KA+
Sbjct: 26 AFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
Query: 427 RHG 435
G
Sbjct: 86 HQG 88
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +2
Query: 185 DDDRKLFVGGLSWETTDKELRDHLE---HTVK*RVLM 286
D + + F+GGL+W T+D+ LRD E H V+ +V++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVL 40
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATP 665
+++E ++ DK + +GF FITF+ ++ +++ + + G+ + V +A P
Sbjct: 32 HLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQP 85
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FG GE+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFGI 510
+FVG + + + +R +G+
Sbjct: 294 DTLFVGNICKIWTPEALREKLKHYGV 319
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 417
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 418 AKARHG-------KIFVGGLSSEISDDEIRNFFSEFG 507
K G K+FVG L +S+ E+++ FSE+G
Sbjct: 88 VKYADGELERLEHKLFVGMLPKNVSETEVQSLFSEYG 124
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKP 671
++E + +D+ + KGF F+T++S Q V + +K+ + G+++ V A +P
Sbjct: 230 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Score = 34.7 bits (76), Expect(2) = 0.004
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
F + G +E + V D TGRSRGF F+ S+ +V AA + N ++D + +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNA 166
Query: 433 G 435
G
Sbjct: 167 G 167
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 429
F G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 23.0 bits (47), Expect(2) = 0.004
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+++VG LS + D + + FSE G
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQG 228
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEI +NV D T RS+G+ F+ FK ES + TI + + K A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/85 (17%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVDPKKAKARH 432
G+ GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H
Sbjct: 113 GSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH 172
Query: 433 GKIFVGGLSSEISDDEIRNFFSEFG 507
++F+G + + +I+ + G
Sbjct: 173 -RLFLGNVPRNWMESDIKKAANRIG 196
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 501 IWNILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEV 644
I + EV + +K KG+ F+TF S+ + + + T T GK +
Sbjct: 115 IGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 354
F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 408
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 409 PKKAKARHGKI 441
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 408
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 409 PKKAKARHGKI 441
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 430 HGKIFVGGLSSEISDDEIRNFFSEFG 507
H K+FVGGL+ E DE+R +F +FG
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFG 41
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET E+R + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFD 38
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKP 671
ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 43 ILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRP 99
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 110 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 247
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
+F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 110 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 247
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGLS D ++ F+ FG
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFG 59
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 417
+FG YG I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 244 TFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKAR 429
F G++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+ R
Sbjct: 95 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRR 154
Query: 430 HGK 438
G+
Sbjct: 155 RGR 157
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
+F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 53 AFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
FG YG+I S V N GRS+GF F+ F
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES-------IDKVMAAGEHTINNKKVDP 411
F +G I S V + G+S+GF F+ F +S + M G+ K ++
Sbjct: 132 FCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINK 189
Query: 412 KKAKARHG-----KIFVGGLSSEISDDEIRNFFSEFG 507
+ A G ++V L ++DD + FS++G
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYG 226
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET LR++ E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 36.3 bits (80), Expect = 0.020
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+FVGGL+ E +RN+F +FG
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFG 31
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET LR++ E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.027
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +1
Query: 268 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 414
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 415 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 501
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.027
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +1
Query: 268 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 414
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 415 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 501
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
IFVGGL S ++D++++ F+EFG
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFG 328
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDP 411
+F +G+I + + +TGRSRGF FI F ++D+ + G+ I+ + +P
Sbjct: 26 AFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEP 85
Query: 412 K 414
K
Sbjct: 86 K 86
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 424 ARHG-KIFVGGLSSEISDDEIRNFFSEFG 507
A+ G +IFVGGLS E++D ++ FS FG
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFG 31
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 668
+IL+ ++ ++ + +GF FITF + +++ ++ R G + + V RA PK
Sbjct: 32 DILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 647
++++ ++ D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 31 DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 647
++++ ++ D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 31 DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
+F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 647
++++ ++ D+ + +GF F+TF+ E+ + D ++ + GKE+D
Sbjct: 31 DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE----EMNGKELD 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 531 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 345
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 531 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 345
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.035
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 420
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 531 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 173 FDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 345
+F YGEIE D +G+S+G+ FI++K+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.1 bits (77), Expect = 0.047
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
IFVGGL + ++DDE+++ F +FG
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG 284
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVF 339
YG ++ V D TGRS+G+ F+ F
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
+FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 433 GKIFVGGLSSEISDDEIRN 489
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 650
+++V++ +DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 142 VVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 420
F G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.047
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 339
+F ++GE+ + + D +GRSRGF F+ F
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GGLS + + +++ FS FG
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFG 65
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRD 250
KLF+GGLSW ++ L+D
Sbjct: 42 KLFIGGLSWSVDEQSLKD 59
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 357
F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 662
+ + ++ D+ + KGF F+TF+ E D ++T + G+E+D + T
Sbjct: 70 VFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNIT 116
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.1 bits (77), Expect = 0.047
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 24/110 (21%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV--MAAGEHTI----NNK 399
+FG YG+I S V D +G SR F F+ F +PE +++K+ ++ GE + K
Sbjct: 244 TFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 400 KVDPKK--------------AKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
K D ++ K + +++ L ++D++++ FSE+G
Sbjct: 303 KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 352
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------D 408
F + ++ V D T RS G+A++ F PE + M + + I ++ + D
Sbjct: 65 FNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD 123
Query: 409 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
P + G +F+ L + I + + FS FG
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 351
F YG + S V + + G SRGF F+ + PE
Sbjct: 348 FSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 426
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 427 RHG 435
+ G
Sbjct: 91 KVG 93
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 668
I E ++ + + +GF FITF + +D +K R +G K + V +A PK
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 191 DRKLFVGGLSWETTDKEL 244
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKA 426
+F YG+I + +TGR RGF FI F D + + NK + KA+
Sbjct: 31 TFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEP 90
Query: 427 RHG 435
+ G
Sbjct: 91 KVG 93
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPK 668
I E ++ + + +GF FITF + +D +K R +G K + V +A PK
Sbjct: 38 ITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 191 DRKLFVGGLSWETTDKEL 244
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
F A+G +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLEH 262
KLF+GGLSW T D LRD H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 339
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLEH 262
KLF+GGLSW T D LRD H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVF 339
+F +G++ V D TGRSRGF F+ F
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
K+F+GGLS D +R+ F+ FG
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFG 59
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 34.7 bits (76), Expect = 0.062
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 250 SFGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 399
+F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 131 TFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 265 GEIESINVKTDPNTGRSRGFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAK 423
G + ++ V D T + + FI +++ E D KV+ G+ NK KK+
Sbjct: 49 GPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL 108
Query: 424 ARHGKIFVGGLSSEISDDEIRNFFSEFGI 510
+F+G L ++ + + + FS FG+
Sbjct: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.7 bits (76), Expect = 0.062
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
+FG++G+I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 55 AFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.062
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.062
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FVGGL + ++DD ++N FS++G
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG 285
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 34.3 bits (75), Expect = 0.082
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
+FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 114 AFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.3 bits (75), Expect = 0.082
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
IFVGGL S ++D++++ FSEFG
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFG 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 433 GK 438
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 433 GK 438
GK
Sbjct: 731 GK 732
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 265 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 259 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 429
F G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 430 HG-------------KIFVGGLSSEISDDEIRNFFSEFG 507
+I+VG L ++ + FSE G
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHG 231
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 152 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 358 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
DK + G + ++ D K + ++V L+ +DD+++N F E+G
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 53
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 405
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 406 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 507
D ++ + K+FVG L+ + ++ E+ F +FG
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQ 590
N+LEV + DK Q++G CF+ + + +
Sbjct: 145 NVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKV 405
F +G + + + D TG+ +G F+ + + D+ + A G + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199
Query: 406 DPKKAK--ARHGKIFVGGLSSEISDDEIRNFFSEFG 507
D ++ + K+FVG L+ + ++ E+ F +FG
Sbjct: 200 DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG 235
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQ 590
N+LEV + DK Q++G CF+ + + +
Sbjct: 145 NVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFI 333
F GE+ ++V TD TG SRGFA+I
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 340 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
K ++ V A + K + + +F G LS +I+ +I NFF E G
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAG 408
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 342
SF A+ V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 342
+F +G++ + D +GRSRGF F+ FK
Sbjct: 25 TFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +3
Query: 507 NILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 635
++++ ++ D+ + +GF F+TF+ E+ + D ++ + GG
Sbjct: 31 DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
+ FVGGL+ +D++++ FS+FG
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFG 30
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDPKKAKAR 429
F G +E V + T +SRGF F+ + E+ V + +N + + KA R
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
Query: 430 HG-------------KIFVGGLSSEISDDEIRNFFSEFG 507
+++VG L ++ + + FSE G
Sbjct: 230 GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHG 268
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVGGL+WET + ++ H E
Sbjct: 14 KVFVGGLAWETHKETMKKHFE 34
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVD 408
F +G ++ + V + TG+S+ F FI F+ PE + +AAG EH + ++
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIE 137
Query: 409 PKKAK 423
P+ K
Sbjct: 138 PENVK 142
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
F +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 232 FSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 31.1 bits (67), Expect = 0.76
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 25/110 (22%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH--------- 384
F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDM 187
Query: 385 ---TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFG 507
T N +V PKK +++H K++VG L D +RN FS+FG
Sbjct: 188 NPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFG 236
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
+F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 50 AFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 406 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
+P++ + GKIFVG L + I E FF +FG
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFG 189
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKKAK 423
F + I+ + + D T SRGFAF+ F + E K + A T N K + AK
Sbjct: 478 FSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
Query: 424 ARHG 435
+ HG
Sbjct: 538 SVHG 541
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 384
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
+F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 40 AFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEV 644
+L+V++ DK + + KGF ++TF S E+ LL+ + + G+ V
Sbjct: 47 VLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 390
F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 258 FSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 373 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
AG H N D ++ + IFVGGL ++++++++ FS+FG
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFG 351
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 256 GAYGEIESINVKTDPNTGRSRGFAFIVF 339
G Y ++ V D NTGRS+G+ F+ F
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 405
F G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 65 FAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPK 414
+F YG + V D T RSRGF F+ + + + ++ + +N ++V K
Sbjct: 22 AFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 360
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 429
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 269 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 671
++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 275 VVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 329
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 360
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 429
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 671
++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 283 VVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFK 342
SF + V D TGRSRGF F+ F+
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
F + GEI++++V D +TG S+G A++ F
Sbjct: 425 FSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFGIS*KWRCPL 534
K++VGG+ + ++DEIR++F G+ K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 27.5 bits (58), Expect = 9.4
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +2
Query: 185 DDDRKLFVGGLSWETTDKELR 247
D ++++G L+W+TT++++R
Sbjct: 259 DGYNRVYIGNLAWDTTERDIR 279
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
F +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 536 FNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 417
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 418 AKARHG----------------KIFVGGLSSEISDDEIRNFFSEFG 507
K G K+FVG L +S+ E+++ FSE+G
Sbjct: 88 VKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYG 133
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +1
Query: 271 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 423
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 146 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHLE 259
DS+D + +E+P +KLF+ GLS+ T++K LR E
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFE 303
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 354
+F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINN 396
F +G++ + V D +T +SRG AF+++ + E K + + I N
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILN 124
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 351
F A+GEI + + D RS+G+AFI F + +
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 342
F Y V D TGRSRGF F+ F+
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 372
+F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 408
F YG+I + +D T RS+G+ F+ FK ++ + IN ++ +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRAN 88
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDH 253
K+FVGGL+W+T + + DH
Sbjct: 18 KVFVGGLAWDTHKEAMYDH 36
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
F +G + + V D TG SRGF F+ F + E + +
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 426
+F G++ + D + RS+GF F+ F + + K +M +N + + AKA
Sbjct: 53 AFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKA 112
Query: 427 R 429
+
Sbjct: 113 K 113
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPK 668
++E ++ D+ ++ KGF F+TF S ++ L++ + + G+ + V A K
Sbjct: 60 VVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
F +G+I+ + D T R +GF FI F + + K +
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 510 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 647
I E + D + KGF FITF+SE LK ++ GK VD
Sbjct: 33 IKEARLIRDSETQRPKGFGFITFDSEDDARKALK----SLDGKIVD 74
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +2
Query: 119 NGNAENGG--GDSQDHNSAEAPGRDDDR 196
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 375
F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 581 FTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKA 426
+F G + + T+ + RGFAF+ F E +++ + T+ +++ K+A
Sbjct: 39 AFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Query: 427 R 429
R
Sbjct: 99 R 99
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Frame = +1
Query: 274 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 423
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 424 --ARHGKIFVGGLSSEISDDEIRNFFSEFG 507
K+FVG LS ++ + + F E G
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECG 201
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 250 SFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
+F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 196 AFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 24/106 (22%)
Frame = +1
Query: 262 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTIN---------NKK-- 402
Y ++ V D TGRS+G+ F+ F + M G++ + NKK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 403 -VDPKKAKARHGK----------IFVGGLSSEISDDEIRNFFSEFG 507
+ P + G IFVG + +++D++++ F +FG
Sbjct: 257 TMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFG 302
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
F +YG I+ +++ TD T + +G+AFI +
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 77 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 196
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 74 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 166
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 436 KIFVGGLSSEISDDEIRNFFSEFG 507
KIFVG L+ + D++R +F +FG
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFG 36
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
K+FVG L+W TT +LR + E
Sbjct: 13 KIFVGNLTWRTTADDLRRYFE 33
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 369
F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 319 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 498
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 499 EFG 507
+FG
Sbjct: 99 QFG 101
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 197 KLFVGGLSWETTDKELRDHLE 259
KL+V GLS+ TT+ LRD E
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFE 98
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE--VDVKRAT 662
D T + KGF F FES E ++ + +RTI G+E V+V +AT
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQAT 282
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 429
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 176 FSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKEK 231
Query: 430 HGKI 441
GK+
Sbjct: 232 -GKV 234
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 119 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 250
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 104 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHL 256
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 104 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHL 256
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 104 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHL 256
T NG GGG + + P R + ++ V GL + ++L+DH+
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHM 139
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 376 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
GE NN + + + + VG +SS + D E++ F +FG
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFG 241
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 531 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 289 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 337
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 531 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 671
F +T+ G C F+ FE V + +K +GG++V ++ P P
Sbjct: 348 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNP 396
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 369
F +G + +V D T SRGF F+ F + E + +
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 429
F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K +
Sbjct: 279 FSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEK 334
Query: 430 HGKI 441
GK+
Sbjct: 335 -GKV 337
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 534 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 659
D+ + KGF FITFESE LK + + G+ + V+ A
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +1
Query: 250 SFGAYGEIESI----NVKTDPNTGRSRGFAFIVFK 342
SF A+ S V D TGRSRGF F+ F+
Sbjct: 167 SFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 71 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 202
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 429
F +G ++ + + + R F F+ F PE++ V+A G H I + +V K K +
Sbjct: 280 FSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEK 335
Query: 430 HGKI 441
GK+
Sbjct: 336 -GKV 338
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 259 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 259 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 259 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 375
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 442 FVGGLSSEISDDEIRNFFSEFG 507
+VG L S+ +++++N FS+FG
Sbjct: 11 YVGNLESDTEENDLKNAFSQFG 32
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 426
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 426
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 149 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHL 256
S ++++ AP R D ++ V GL + ++L+DH+
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHM 129
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 360
F GEI+ I + D NT GF F++F + E +
Sbjct: 54 FSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FV G S +S+ ++ FSEFG
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFG 82
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 439 IFVGGLSSEISDDEIRNFFSEFG 507
+FV G S +S+ ++ FSEFG
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFG 101
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 307 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 405
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVF 339
F +G + + + D +G+ RGFAF+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FGAYGEI I + PN R + + E+ K + E I K + K +R
Sbjct: 290 FGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI--KLELSRP 343
Query: 433 G---KIFVGGLSSEISDDEIRNFFSEFG 507
G ++ V S ++ E+ NF+++ G
Sbjct: 344 GGARRLSVPSQSQDLERTEVTNFYNQVG 371
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 253 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 432
FGAYGEI I + PN R + + E+ K + E I K + K +R
Sbjct: 303 FGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRSE--IGGKCI--KLELSRP 356
Query: 433 G---KIFVGGLSSEISDDEIRNFFSEFG 507
G ++ V S ++ E+ NF+++ G
Sbjct: 357 GGARRLSVPSQSQDLERTEVTNFYNQVG 384
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 406 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 507
DP + G +FV L I + ++ + FS FG
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFG 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,901
Number of Sequences: 28952
Number of extensions: 328459
Number of successful extensions: 1651
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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