Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20884
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214... 31 1.4
02_05_0015 - 24992253-24993993,24995331-24995695 29 4.2
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 5.5
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 7.3
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 28 7.3
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362... 28 9.7
02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383 28 9.7
02_01_0737 + 5492446-5492770,5492818-5493614 28 9.7
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 9.7
>05_06_0041 -
25120961-25121005,25121143-25121194,25121429-25121496,
25122167-25122220,25122473-25122541,25122655-25122714,
25122876-25123048,25123847-25123920,25124472-25124585,
25124688-25124754,25124840-25124904,25125504-25125583,
25125689-25125733,25126235-25126300,25126746-25126901,
25127292-25127516,25127630-25127672,25127997-25128040,
25128191-25128263,25130335-25130414
Length = 550
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -2
Query: 274 RLPSSIVLLGAVGRYLLLRFAEVRFGRPEFCIRFWYSLVGCNVFILFHLPSINRETVFPW 95
R PS +V +GR L L + + F F Y ++ C+ FIL H N T++PW
Sbjct: 271 RPPSCLVPGAGLGR-LALEISTLGFVSQGN--EFSYYMMICSSFILNHTQETNEWTIYPW 327
Query: 94 L 92
+
Sbjct: 328 I 328
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 310 AKYVVGDHRNGDAKIELDANKRQFTGMTREEVLKYADDPFWVN 438
AK V+ + GD + K T + RE V YADDP N
Sbjct: 531 AKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSAN 573
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 440 CVGRCSCCSGWPGCACSPGLLQSCTRSQ 523
C C C SG GC PG+ + T +Q
Sbjct: 1092 CGSGCQCGSGCGGCKMYPGMAEEVTTTQ 1119
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 480 QPGHPEQHEQRPTQVHPERIVSILQYLLSRH 388
Q G E H RP + PER VSIL+ L H
Sbjct: 316 QAGMLESHPWRPQRGLPERAVSILRAWLFEH 346
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 440 CVGRC-SCCSGWPGCACSPGLLQSC 511
C+ C +CC GW C P L++C
Sbjct: 235 CLAGCRNCCYGWGVLDCLPASLEAC 259
>09_04_0265 +
16233596-16233752,16234206-16234720,16236199-16236229,
16236559-16237001
Length = 381
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 493 GAIAVMYALPSAARPNPGHGTNSVLWSDW-SWSMPS 597
G +AV LP+ P P G LW DW +W S
Sbjct: 135 GCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGS 170
>02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383
Length = 488
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 537 RAGRTWERVHDCNSPGEHAQPGHPEQHEQRPTQVHPERI 421
+ G+T +VH N P +H HE + T HPE++
Sbjct: 454 KKGQTEMKVHPLNVPDDH----DASTHESQTTTKHPEQV 488
>02_01_0737 + 5492446-5492770,5492818-5493614
Length = 373
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 567 EDRVRTMSWVRAGRTWERVHDCNSP 493
E++ T + + WE+VHDCN P
Sbjct: 210 EEQRGTYGFHVVDKAWEKVHDCNLP 234
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 634 RHSKFRACSSKCRLTNAR---QT*HTGRIQNSVQQN*EDRSKSDC*LIPN 774
RHS FR C + NA Q+ G++ N V++ + RS L+P+
Sbjct: 767 RHSSFRVCGEQAVAENAEMGVQSSDVGKLLNVVREEVDSRSIPSNNLVPH 816
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,716,875
Number of Sequences: 37544
Number of extensions: 484016
Number of successful extensions: 1557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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