Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20882
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    75   1e-12
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    50   6e-05
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.049
UniRef50_A1WW68 Cluster: Abi family protein; n=1; Halorhodospira...    36   1.1  
UniRef50_Q044P3 Cluster: Phage Mu gp47 related protein; n=3; roo...    35   2.5  
UniRef50_A7SEV6 Cluster: Predicted protein; n=1; Nematostella ve...    34   4.3  
UniRef50_A7RHB8 Cluster: Predicted protein; n=1; Nematostella ve...    34   4.3  
UniRef50_O27148 Cluster: Putative uncharacterized protein; n=1; ...    34   4.3  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   5.7  
UniRef50_Q7S2N2 Cluster: Predicted protein; n=1; Neurospora cras...    33   5.7  
UniRef50_Q4RGP9 Cluster: Chromosome 4 SCAF15094, whole genome sh...    33   7.5  
UniRef50_Q1D592 Cluster: Non-ribosomal peptide synthase/polyketi...    33   7.5  
UniRef50_Q4T2J4 Cluster: Chromosome undetermined SCAF10255, whol...    33   9.9  
UniRef50_Q49701 Cluster: B1496_F1_41; n=1; Mycobacterium leprae|...    33   9.9  
UniRef50_Q00YF6 Cluster: N2,N2-dimethylguanosine tRNA methyltran...    33   9.9  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
 Frame = -3

Query: 749  YKACIICSVMAYTSVVFAHGTRKYINSLRN-PIQF--LQDSRSTVVYEEVLHVDFQLEPI 579
            YK CI   VM Y SVVFAH  R +I++L++   +F  L       V    LH D  LE I
Sbjct: 814  YKTCIR-PVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESI 872

Query: 578  RTYLKTASERFFEKAARHDNPL-----------RYGATQSRCSPKHVLQDPPDPLSVLLG 432
            R ++K+ SER+F+KA RHDN L            +     R  P+HVL DP DP+++ L 
Sbjct: 873  RKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALD 932

Query: 431  SPITGHRSR 405
            +  +  RSR
Sbjct: 933  TFSSNTRSR 941


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 50.0 bits (114), Expect = 6e-05
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
 Frame = -3

Query: 749 YKACIICSVMAYTSVVFAHGTRKYINSLR---NPIQFLQDSRSTVVYEEVLHVDFQLEPI 579
           YK CI   V+ Y+  VFAH ++   + L+   N +          +    LH + ++  I
Sbjct: 25  YKTCIR-PVITYSCPVFAHMSKDNFHKLQVFQNRVLRKVTGTPWYIRRVDLHRNLEIPSI 83

Query: 578 RTYLKTASERFFEKAARHDNPL-----RY----GATQSRCSPKHVLQDPPDPLSVL 438
            TY+K+ +  +FEKAA H +PL      Y     A + R  P+H+  DPPD ++ +
Sbjct: 84  WTYVKSLTISYFEKAANHPSPLVVSAANYQPVPNAARPRRRPRHIFIDPPDEITAV 139


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.3 bits (90), Expect = 0.049
 Identities = 21/38 (55%), Positives = 24/38 (63%)
 Frame = -3

Query: 512 RYGATQSRCSPKHVLQDPPDPLSVLLGSPITGHRSRRI 399
           R GAT+SR  P HVL DP D LSVLL    TG+   R+
Sbjct: 27  RDGATKSRRHPNHVLSDPRDSLSVLLDLSSTGYCPCRV 64


>UniRef50_A1WW68 Cluster: Abi family protein; n=1; Halorhodospira
           halophila SL1|Rep: Abi family protein - Halorhodospira
           halophila (strain DSM 244 / SL1)
           (Ectothiorhodospirahalophila (strain DSM 244 / SL1))
          Length = 318

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = -2

Query: 438 FRLSNYWSPFSPDLLSGSRFRSGGRFDEAL 349
           +RL+ YW PF  D  S  +FRSG RF++AL
Sbjct: 43  YRLTAYWLPFEEDY-STHQFRSGARFEDAL 71


>UniRef50_Q044P3 Cluster: Phage Mu gp47 related protein; n=3;
           root|Rep: Phage Mu gp47 related protein - Lactobacillus
           gasseri (strain ATCC 33323 / DSM 20243)
          Length = 383

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 575 TYLKTASERFFEKAARHDNPLRYGATQSRCSPKHVLQDPPDPL-SVLLGSPITGHRSRRI 399
           TY+KTAS  F +  A      RY ATQ+    K VL D  +PL +V +G          I
Sbjct: 63  TYIKTASGEFLDYRAIEHGTSRYPATQTEAKAK-VLNDKKEPLDNVQIGDKFASIGDSPI 121

Query: 398 F 396
           F
Sbjct: 122 F 122


>UniRef50_A7SEV6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 717

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
 Frame = -3

Query: 491 RCS--PKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDPVEDSTKHCFG*S*C*KFT 318
           RCS  P H     P P S  L SP+T  R R  F+VG  S P    T+     S C   +
Sbjct: 90  RCSWDPSHPFSQSPPPSSPFLQSPMTSPR-RATFTVGSPSSPPTPRTRRYSSGSRCSPSS 148

Query: 317 QVEPVSSPIRPSGIASSATSDRLRKRKR*NSWKELGMSNTKPSAVTSCCVLNTTPVIIGQ 138
           Q  P     +P+G      S   R  +R +S    G+  + P  +T      +TPV + +
Sbjct: 149 Q-SPQDFH-QPAG-----HSPHSRPIRRTHSSSSPGVPPSPPPTMTIVSKPTSTPVPVPR 201

Query: 137 YVFF 126
              F
Sbjct: 202 RATF 205


>UniRef50_A7RHB8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1127

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 49  HYYFSALRRAPVT-YTAVNVLSSLAFLKKTYCPMITGVVFRTQHEVTAEGFVLDIPS-SF 222
           H +FS + R P + +T V  LS    L   YC MIT  +F      T E +V+ I S SF
Sbjct: 259 HLWFSIVTRPPQSVFTRVQRLSCC--LSLLYCTMITSCMFYNTGGETNENYVIHIGSLSF 316

Query: 223 QEFHLFLFLNLSLV 264
               + + L  SL+
Sbjct: 317 DLRQMIIGLQSSLI 330


>UniRef50_O27148 Cluster: Putative uncharacterized protein; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           Putative uncharacterized protein - Methanobacterium
           thermoautotrophicum
          Length = 400

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 420 WSPFSPDLLSGSRFR-SGGRFDEALLWLKLVLEIYSG*ARELTYPSEWNSL 271
           + PF PDLL+ SR R S GR+D+A   L   LE+ +    E  Y  E +S+
Sbjct: 249 YRPFLPDLLANSRRRASEGRYDDAAARLYRALELIAQILIEEEYGDETDSI 299


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -2

Query: 411 FSPDLLSGSRFRSGGRFD 358
           FSPDLLSGSRFR+G  ++
Sbjct: 399 FSPDLLSGSRFRTGAEYE 416


>UniRef50_Q7S2N2 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 554

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 443 PRVDREDPVRHVLDYIDFA-LPHI*EGYRDAPLFQ--RSVLTLSSDTYVSVLIGSQREEP 613
           P     D +  + D IDF+ L  I E +RD P+    R+  +  +DT++S L  S    P
Sbjct: 259 PTTASVDELMALFDNIDFSDLASIAEQFRDKPVKSGYRAKKSTKADTHLSDLTASSFSHP 318

Query: 614 PHIPRCS 634
           P IP  S
Sbjct: 319 PTIPESS 325


>UniRef50_Q4RGP9 Cluster: Chromosome 4 SCAF15094, whole genome shotgun
            sequence; n=1; Tetraodon nigroviridis|Rep: Chromosome 4
            SCAF15094, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1321

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -3

Query: 644  QDSRSTVVYEEVLHVDFQLEPIRTYLKTASERFFEKAARHDNPLRYGATQSRCSPKHV 471
            +D  +TV+ ++  H+  +LE  R   +  SE+  + ++   +P R G     CSP H+
Sbjct: 1264 KDGENTVMKDKTSHLSTELERERAQNRRVSEQLQQTSSGSTSPSRSGIFLIHCSPFHL 1321


>UniRef50_Q1D592 Cluster: Non-ribosomal peptide synthase/polyketide
            synthase; n=2; Bacteria|Rep: Non-ribosomal peptide
            synthase/polyketide synthase - Myxococcus xanthus (strain
            DK 1622)
          Length = 3780

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 545  FEKAARHDNPLRYGATQSRCSPKHVLQDPPDPLSVLLGSPITGHRSRRIFSVGRDSDPVE 366
            +  A  H +P R     +R    H++  P     +L  +P+ G R  R  SVG +  PVE
Sbjct: 2931 YPDAEEHGDPRRLAERIARSHVTHLVSVPSLYGQILAAAPVGGLRGLRAVSVGGEPCPVE 2990

Query: 365  DSTKH 351
             +  H
Sbjct: 2991 LTRAH 2995


>UniRef50_Q4T2J4 Cluster: Chromosome undetermined SCAF10255, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF10255,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 1237

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 105 VEQFGFFEEDVLSNDHRCCIQDTARGHSRGFCVR 206
           VE F +  E   ++ HRC      R HSRG+C R
Sbjct: 324 VEVFSYSLETCANHAHRCSALAECRDHSRGYCCR 357


>UniRef50_Q49701 Cluster: B1496_F1_41; n=1; Mycobacterium
           leprae|Rep: B1496_F1_41 - Mycobacterium leprae
          Length = 165

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 326 KFTQVEPVSSPIRPSGIASSAT 261
           + T   P+SSPI PSGIAS+AT
Sbjct: 120 RLTDSGPISSPINPSGIASAAT 141


>UniRef50_Q00YF6 Cluster: N2,N2-dimethylguanosine tRNA
           methyltransferase f; n=2; Ostreococcus|Rep:
           N2,N2-dimethylguanosine tRNA methyltransferase f -
           Ostreococcus tauri
          Length = 471

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 503 PHI*EGYRDAPLFQRSV-LTLSSDTYVSVLIGSQREEPPHIPRCSGYLAETGLDYVESLC 679
           PH     RDA + +R V + +   T+        R+    + R  G   E GLD  +  C
Sbjct: 36  PHGRTTARDAVVRERGVDIVVDESTFYRPESAQARDLGALLARSHGRALERGLDACDGTC 95

Query: 680 TCGSRERKLHLC-MPLRNILC 739
             G+R  ++  C + LR++ C
Sbjct: 96  ASGARFARMAACGVNLRSVTC 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,121,625
Number of Sequences: 1657284
Number of extensions: 16371899
Number of successful extensions: 42258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 40644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42249
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)